miRNA display CGI


Results 101 - 120 of 269 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13938 5' -64.4 NC_003521.1 + 71399 0.69 0.481367
Target:  5'- uCGuCCGCGuG-AGCgagGCGGCGgCCCCgaaCCu -3'
miRNA:   3'- -GC-GGCGC-CaUCGa--CGCCGC-GGGGa--GG- -5'
13938 5' -64.4 NC_003521.1 + 109048 0.69 0.481367
Target:  5'- -aCUGUGGUGGCUGCugccGCGCCUCgagcgCCu -3'
miRNA:   3'- gcGGCGCCAUCGACGc---CGCGGGGa----GG- -5'
13938 5' -64.4 NC_003521.1 + 215550 0.69 0.481367
Target:  5'- cCGCUgGCGGUGGcCUGCcucugcaucuCGCCCUUCCa -3'
miRNA:   3'- -GCGG-CGCCAUC-GACGcc--------GCGGGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 160805 0.69 0.48484
Target:  5'- gCGCCGCGucucuGUcuccgcguacgaggaGGCUGCcGC-CCCCUCCu -3'
miRNA:   3'- -GCGGCGC-----CA---------------UCGACGcCGcGGGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 125378 0.69 0.490072
Target:  5'- aGCUGaCGGcGGCcGUGGUGCCCaUCCc -3'
miRNA:   3'- gCGGC-GCCaUCGaCGCCGCGGGgAGG- -5'
13938 5' -64.4 NC_003521.1 + 164007 0.69 0.490072
Target:  5'- gCGCCGCuGUuGCcGcCGGCGCCgCUCa -3'
miRNA:   3'- -GCGGCGcCAuCGaC-GCCGCGGgGAGg -5'
13938 5' -64.4 NC_003521.1 + 62503 0.69 0.490072
Target:  5'- aGCCGCGcGUccAGCcG-GGCGC-CCUCCu -3'
miRNA:   3'- gCGGCGC-CA--UCGaCgCCGCGgGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 74184 0.69 0.490072
Target:  5'- gCGCCGCGGc-GCccgGCGcGCGgCCCgacgCCg -3'
miRNA:   3'- -GCGGCGCCauCGa--CGC-CGCgGGGa---GG- -5'
13938 5' -64.4 NC_003521.1 + 233341 0.69 0.490072
Target:  5'- aGCgGCGGaGGCgGCGGCaGUCCCagCa -3'
miRNA:   3'- gCGgCGCCaUCGaCGCCG-CGGGGagG- -5'
13938 5' -64.4 NC_003521.1 + 216673 0.69 0.496209
Target:  5'- -uCCGCGGUGGUcGCGGCgacGUuauaggcacgaacgCCCUCCg -3'
miRNA:   3'- gcGGCGCCAUCGaCGCCG---CG--------------GGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 215906 0.69 0.49885
Target:  5'- cCGCCGCGacca-UGCGGaGCCCCgUCCu -3'
miRNA:   3'- -GCGGCGCcaucgACGCCgCGGGG-AGG- -5'
13938 5' -64.4 NC_003521.1 + 221237 0.69 0.49885
Target:  5'- cCGCgaCGUGG-AGCUGCaGCGCuCCCUgCu -3'
miRNA:   3'- -GCG--GCGCCaUCGACGcCGCG-GGGAgG- -5'
13938 5' -64.4 NC_003521.1 + 45958 0.69 0.49885
Target:  5'- uCGCCGCGGUAcgguguccGCU-CGGUGUCCggCCc -3'
miRNA:   3'- -GCGGCGCCAU--------CGAcGCCGCGGGgaGG- -5'
13938 5' -64.4 NC_003521.1 + 223367 0.69 0.49885
Target:  5'- gGCCuuGGUcagcAGCgacaucGCGGCGCCCCgacgcgggCCg -3'
miRNA:   3'- gCGGcgCCA----UCGa-----CGCCGCGGGGa-------GG- -5'
13938 5' -64.4 NC_003521.1 + 173055 0.69 0.49885
Target:  5'- cCGCCacggGCGGcgUGGUccGCGGCGCCCC-Cg -3'
miRNA:   3'- -GCGG----CGCC--AUCGa-CGCCGCGGGGaGg -5'
13938 5' -64.4 NC_003521.1 + 137298 0.69 0.507698
Target:  5'- aGCUGCgGGUGGCgcggcugcugcGCGGCGaCCCCg-- -3'
miRNA:   3'- gCGGCG-CCAUCGa----------CGCCGC-GGGGagg -5'
13938 5' -64.4 NC_003521.1 + 35028 0.68 0.51393
Target:  5'- gGCggaCGCGGUugGGCacgcucaugccgUGCGGCGCCaccacacaggucuuCCUCCg -3'
miRNA:   3'- gCG---GCGCCA--UCG------------ACGCCGCGG--------------GGAGG- -5'
13938 5' -64.4 NC_003521.1 + 166788 0.68 0.51393
Target:  5'- aGCUGCGGgcccuacugacGCUcaucaacucggacGCGGCGCCCCgCUg -3'
miRNA:   3'- gCGGCGCCau---------CGA-------------CGCCGCGGGGaGG- -5'
13938 5' -64.4 NC_003521.1 + 132434 0.68 0.51661
Target:  5'- aCGCCGCuGGUAGCgGUGGUgggcuguucgGCgCgUCCg -3'
miRNA:   3'- -GCGGCG-CCAUCGaCGCCG----------CGgGgAGG- -5'
13938 5' -64.4 NC_003521.1 + 114958 0.68 0.51661
Target:  5'- aGCgGCGGcuGCUGCGGCGUCagucgCCu -3'
miRNA:   3'- gCGgCGCCauCGACGCCGCGGgga--GG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.