miRNA display CGI


Results 121 - 140 of 269 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13938 5' -64.4 NC_003521.1 + 114958 0.68 0.51661
Target:  5'- aGCgGCGGcuGCUGCGGCGUCagucgCCu -3'
miRNA:   3'- gCGgCGCCauCGACGCCGCGGgga--GG- -5'
13938 5' -64.4 NC_003521.1 + 132434 0.68 0.51661
Target:  5'- aCGCCGCuGGUAGCgGUGGUgggcuguucgGCgCgUCCg -3'
miRNA:   3'- -GCGGCG-CCAUCGaCGCCG----------CGgGgAGG- -5'
13938 5' -64.4 NC_003521.1 + 232804 0.68 0.525586
Target:  5'- aCGCCuccgGCGGUcuggAGCUaCGGCGCUgccccgguaCCUCCc -3'
miRNA:   3'- -GCGG----CGCCA----UCGAcGCCGCGG---------GGAGG- -5'
13938 5' -64.4 NC_003521.1 + 168794 0.68 0.525586
Target:  5'- cCGCCGCGcUGGCcgccagccUGCuGGCGUcgccgUCCUCCg -3'
miRNA:   3'- -GCGGCGCcAUCG--------ACG-CCGCG-----GGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 202325 0.68 0.525586
Target:  5'- uGCUGCuGGaacuGCUGcCGGUGCUaCCUCCu -3'
miRNA:   3'- gCGGCG-CCau--CGAC-GCCGCGG-GGAGG- -5'
13938 5' -64.4 NC_003521.1 + 92086 0.68 0.525586
Target:  5'- gGUCGgGGgguGCgcaggGCGGUGCCCCgggUCg -3'
miRNA:   3'- gCGGCgCCau-CGa----CGCCGCGGGGa--GG- -5'
13938 5' -64.4 NC_003521.1 + 143173 0.68 0.525586
Target:  5'- aCGCCGaCGucgccGGCUGaUGGCGCCgCuCUCCa -3'
miRNA:   3'- -GCGGC-GCca---UCGAC-GCCGCGG-G-GAGG- -5'
13938 5' -64.4 NC_003521.1 + 238991 0.68 0.525586
Target:  5'- uGCUGCuGGaacuGCUGcCGGUGCUaCCUCCu -3'
miRNA:   3'- gCGGCG-CCau--CGAC-GCCGCGG-GGAGG- -5'
13938 5' -64.4 NC_003521.1 + 32147 0.68 0.525586
Target:  5'- uGCCGCGGccUGGCggUGCGGUaCCgCUCg -3'
miRNA:   3'- gCGGCGCC--AUCG--ACGCCGcGGgGAGg -5'
13938 5' -64.4 NC_003521.1 + 220340 0.68 0.525586
Target:  5'- aGCUGCGuGUAcgcGCUGCuGGUGCuguCCUUCCu -3'
miRNA:   3'- gCGGCGC-CAU---CGACG-CCGCG---GGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 162594 0.68 0.52829
Target:  5'- gGCUGCGGUGGCacucgcucgacagccUccgacgaGCGccGCGCCCgCUCCg -3'
miRNA:   3'- gCGGCGCCAUCG---------------A-------CGC--CGCGGG-GAGG- -5'
13938 5' -64.4 NC_003521.1 + 128638 0.68 0.533713
Target:  5'- uGCCGUaGGUGGC--CGGCGCCgacaccgUCUCCu -3'
miRNA:   3'- gCGGCG-CCAUCGacGCCGCGG-------GGAGG- -5'
13938 5' -64.4 NC_003521.1 + 239120 0.68 0.534619
Target:  5'- aCGCuCG-GGUuuucCUGCGGCGUCCCcgCCu -3'
miRNA:   3'- -GCG-GCgCCAuc--GACGCCGCGGGGa-GG- -5'
13938 5' -64.4 NC_003521.1 + 232217 0.68 0.534619
Target:  5'- gGUgGUGGUGGCugUGCGGCGUCUgUUg -3'
miRNA:   3'- gCGgCGCCAUCG--ACGCCGCGGGgAGg -5'
13938 5' -64.4 NC_003521.1 + 124023 0.68 0.534619
Target:  5'- uGCCGCGGUgcgucagcGGCUGCuuGGCguuguGCUUgUCCg -3'
miRNA:   3'- gCGGCGCCA--------UCGACG--CCG-----CGGGgAGG- -5'
13938 5' -64.4 NC_003521.1 + 88242 0.68 0.534619
Target:  5'- aGCCGaaGUAGCgcuugUGCGGCGCCagCUUg -3'
miRNA:   3'- gCGGCgcCAUCG-----ACGCCGCGGg-GAGg -5'
13938 5' -64.4 NC_003521.1 + 77939 0.68 0.534619
Target:  5'- gGCaguaGCGGcccacCUGCGcGCGCCCCUgCg -3'
miRNA:   3'- gCGg---CGCCauc--GACGC-CGCGGGGAgG- -5'
13938 5' -64.4 NC_003521.1 + 196438 0.68 0.543707
Target:  5'- uCGCC-CGGgucggccGGCUGCcGCGCgaaCCUCCg -3'
miRNA:   3'- -GCGGcGCCa------UCGACGcCGCGg--GGAGG- -5'
13938 5' -64.4 NC_003521.1 + 150041 0.68 0.543707
Target:  5'- aCGCCGUGGcguugaGGCguaccgcGCGGcCGCCCUcgCCg -3'
miRNA:   3'- -GCGGCGCCa-----UCGa------CGCC-GCGGGGa-GG- -5'
13938 5' -64.4 NC_003521.1 + 138735 0.68 0.543707
Target:  5'- gGCgGCaGGUGGCagaUGUGGCGCCgCCg-- -3'
miRNA:   3'- gCGgCG-CCAUCG---ACGCCGCGG-GGagg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.