miRNA display CGI


Results 141 - 160 of 269 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13938 5' -64.4 NC_003521.1 + 85476 0.68 0.552845
Target:  5'- uCGUCGUGGUGccGgUGCccGCGCCCCcgCCg -3'
miRNA:   3'- -GCGGCGCCAU--CgACGc-CGCGGGGa-GG- -5'
13938 5' -64.4 NC_003521.1 + 226908 0.68 0.552845
Target:  5'- gGCCaGCGc-GGCcuccGCGGC-CCCCUCCg -3'
miRNA:   3'- gCGG-CGCcaUCGa---CGCCGcGGGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 28240 0.68 0.552845
Target:  5'- uGCCGCcGUGGCcGUGaGCGCCgCCUg- -3'
miRNA:   3'- gCGGCGcCAUCGaCGC-CGCGG-GGAgg -5'
13938 5' -64.4 NC_003521.1 + 45576 0.68 0.556513
Target:  5'- aGCCGuCGGccagcucgGGCUccggcuccuggcccaGCGGCGCCCgguccaugauCUCCa -3'
miRNA:   3'- gCGGC-GCCa-------UCGA---------------CGCCGCGGG----------GAGG- -5'
13938 5' -64.4 NC_003521.1 + 33930 0.68 0.561108
Target:  5'- gGCCacggcCGGUcGCUGgaucccgcucugcUGGcCGCCCCUCCa -3'
miRNA:   3'- gCGGc----GCCAuCGAC-------------GCC-GCGGGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 117284 0.68 0.562028
Target:  5'- gGCCGUGGU-GC--CGGCuCCCCUCa -3'
miRNA:   3'- gCGGCGCCAuCGacGCCGcGGGGAGg -5'
13938 5' -64.4 NC_003521.1 + 219434 0.68 0.562028
Target:  5'- aGCCGCcacuGGaacacGCUGCGGCGCcugcugguaCCCUgCCu -3'
miRNA:   3'- gCGGCG----CCau---CGACGCCGCG---------GGGA-GG- -5'
13938 5' -64.4 NC_003521.1 + 37416 0.68 0.562028
Target:  5'- gGCCugacCGuGUGGC-GCGGCGCCgagCCUCUg -3'
miRNA:   3'- gCGGc---GC-CAUCGaCGCCGCGG---GGAGG- -5'
13938 5' -64.4 NC_003521.1 + 32888 0.68 0.562028
Target:  5'- gCGCCGcCGGU-GCUGCcgccGUGCCCg-CCg -3'
miRNA:   3'- -GCGGC-GCCAuCGACGc---CGCGGGgaGG- -5'
13938 5' -64.4 NC_003521.1 + 113097 0.68 0.562028
Target:  5'- cCGCCGUGGUgcAGgaGCGGC-UCUCgggCCa -3'
miRNA:   3'- -GCGGCGCCA--UCgaCGCCGcGGGGa--GG- -5'
13938 5' -64.4 NC_003521.1 + 160509 0.68 0.562028
Target:  5'- cCGCgGCGGgaggaGGggGCGGCaGCCuCCUCg -3'
miRNA:   3'- -GCGgCGCCa----UCgaCGCCG-CGG-GGAGg -5'
13938 5' -64.4 NC_003521.1 + 163372 0.68 0.562028
Target:  5'- gGCgGCGGUGGUcGUGGCGCuggcgCCCgaggacgggCCg -3'
miRNA:   3'- gCGgCGCCAUCGaCGCCGCG-----GGGa--------GG- -5'
13938 5' -64.4 NC_003521.1 + 124677 0.68 0.568481
Target:  5'- gCGUCGCGGUaggugauggucuuuAGCUGgugcaCGGcCGCCuuuaCCUCCu -3'
miRNA:   3'- -GCGGCGCCA--------------UCGAC-----GCC-GCGG----GGAGG- -5'
13938 5' -64.4 NC_003521.1 + 84796 0.68 0.570328
Target:  5'- gGCUGCaGGgcuuGCUgugcaaccauauaGCGGUgcaucGCCCCUCCa -3'
miRNA:   3'- gCGGCG-CCau--CGA-------------CGCCG-----CGGGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 201863 0.68 0.570328
Target:  5'- gGCUcggggacaGCGGUGGCccGCGGCgcguucaGCCCCagCCg -3'
miRNA:   3'- gCGG--------CGCCAUCGa-CGCCG-------CGGGGa-GG- -5'
13938 5' -64.4 NC_003521.1 + 239453 0.68 0.570328
Target:  5'- gGCUcggggacaGCGGUGGCccGCGGCgcguucaGCCCCagCCg -3'
miRNA:   3'- gCGG--------CGCCAUCGa-CGCCG-------CGGGGa-GG- -5'
13938 5' -64.4 NC_003521.1 + 204084 0.68 0.571252
Target:  5'- aCGUCGUGGgccacguGCaccugGUGGCGCCacugcgCCUCCa -3'
miRNA:   3'- -GCGGCGCCau-----CGa----CGCCGCGG------GGAGG- -5'
13938 5' -64.4 NC_003521.1 + 209209 0.68 0.571252
Target:  5'- gGCCGCGGUGGCccUGCcaGCugaCCCUgCCg -3'
miRNA:   3'- gCGGCGCCAUCG--ACGc-CGcg-GGGA-GG- -5'
13938 5' -64.4 NC_003521.1 + 101141 0.68 0.571252
Target:  5'- gGCaCGCGGaaAGC-GCGGCGCggucugcguCCCUCUc -3'
miRNA:   3'- gCG-GCGCCa-UCGaCGCCGCG---------GGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 59594 0.68 0.571252
Target:  5'- gCGCCaagaaggaCGGUAGUgGCGGCGgCCCCg-- -3'
miRNA:   3'- -GCGGc-------GCCAUCGaCGCCGC-GGGGagg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.