miRNA display CGI


Results 81 - 100 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13938 5' -64.4 NC_003521.1 + 132035 0.67 0.608458
Target:  5'- uGCUGCGcucGCUGCGGaucacCGCCugguCCUCCa -3'
miRNA:   3'- gCGGCGCcauCGACGCC-----GCGG----GGAGG- -5'
13938 5' -64.4 NC_003521.1 + 162891 0.67 0.608458
Target:  5'- gGCgUGCGG-AGCgggcGCGGCGCUCgUCg -3'
miRNA:   3'- gCG-GCGCCaUCGa---CGCCGCGGGgAGg -5'
13938 5' -64.4 NC_003521.1 + 40804 0.67 0.608458
Target:  5'- cCGgCGCGGUcAGCUauucgccucgggGCGGgGCCCgCgCCa -3'
miRNA:   3'- -GCgGCGCCA-UCGA------------CGCCgCGGG-GaGG- -5'
13938 5' -64.4 NC_003521.1 + 129971 0.67 0.608458
Target:  5'- gGCCGCGGccGGCagaaGCgGGCGUCCUcgCCc -3'
miRNA:   3'- gCGGCGCCa-UCGa---CG-CCGCGGGGa-GG- -5'
13938 5' -64.4 NC_003521.1 + 134229 0.67 0.59912
Target:  5'- gGCCGa-GUAGCUGCccGCGCcgCCCUCg -3'
miRNA:   3'- gCGGCgcCAUCGACGc-CGCG--GGGAGg -5'
13938 5' -64.4 NC_003521.1 + 49639 0.67 0.59912
Target:  5'- gGuCCaGCGGggGGCaGUGGCGCUCCagCCa -3'
miRNA:   3'- gC-GG-CGCCa-UCGaCGCCGCGGGGa-GG- -5'
13938 5' -64.4 NC_003521.1 + 126952 0.67 0.59912
Target:  5'- gGUCGa-GUAcuGCcugGCGGUGCCCUUCCa -3'
miRNA:   3'- gCGGCgcCAU--CGa--CGCCGCGGGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 49374 0.67 0.59912
Target:  5'- gCGCCGCGGUcaccacGCgcacuuUGUGGauauCGCCCC-CCg -3'
miRNA:   3'- -GCGGCGCCAu-----CG------ACGCC----GCGGGGaGG- -5'
13938 5' -64.4 NC_003521.1 + 197016 0.67 0.59912
Target:  5'- gGCCGgGGcAGCagacggUGCaGGCGCCgCCgCCa -3'
miRNA:   3'- gCGGCgCCaUCG------ACG-CCGCGG-GGaGG- -5'
13938 5' -64.4 NC_003521.1 + 104130 0.67 0.598187
Target:  5'- uCGCCGUGGggacacgauggAGCUGgccCGGCGCCUguguggcuucuugCUCUg -3'
miRNA:   3'- -GCGGCGCCa----------UCGAC---GCCGCGGG-------------GAGG- -5'
13938 5' -64.4 NC_003521.1 + 202377 0.67 0.596323
Target:  5'- cCGUCcCGGUaccugcgccAGCUGCGGUauuagaggcgccggGCCCCgUCCc -3'
miRNA:   3'- -GCGGcGCCA---------UCGACGCCG--------------CGGGG-AGG- -5'
13938 5' -64.4 NC_003521.1 + 238938 0.67 0.596323
Target:  5'- cCGUCcCGGUaccugcgccAGCUGCGGUauuagaggcgccggGCCCCgUCCc -3'
miRNA:   3'- -GCGGcGCCA---------UCGACGCCG--------------CGGGG-AGG- -5'
13938 5' -64.4 NC_003521.1 + 57181 0.67 0.593527
Target:  5'- uGCUggagGCGGU-GCUGCGGCGCugucgcgacggccagCUCUCg -3'
miRNA:   3'- gCGG----CGCCAuCGACGCCGCG---------------GGGAGg -5'
13938 5' -64.4 NC_003521.1 + 123088 0.67 0.589803
Target:  5'- aCGaCGaCGGUAGCgGCGGCGUgUCgcugCCg -3'
miRNA:   3'- -GCgGC-GCCAUCGaCGCCGCGgGGa---GG- -5'
13938 5' -64.4 NC_003521.1 + 80760 0.67 0.589803
Target:  5'- aGCCGUGGgcGGC-GCGGUGgC-CUCCg -3'
miRNA:   3'- gCGGCGCCa-UCGaCGCCGCgGgGAGG- -5'
13938 5' -64.4 NC_003521.1 + 164051 0.67 0.589803
Target:  5'- gGCCgGCGGUGGU---GGCGCCgCUaCCg -3'
miRNA:   3'- gCGG-CGCCAUCGacgCCGCGGgGA-GG- -5'
13938 5' -64.4 NC_003521.1 + 126793 0.67 0.589803
Target:  5'- uGCgCGUGGUccAGCUcCGcGCGCaCCUCCa -3'
miRNA:   3'- gCG-GCGCCA--UCGAcGC-CGCGgGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 119802 0.67 0.589803
Target:  5'- gCGCCGaGGUGguGCUGCGGCacaaCCCguacCCg -3'
miRNA:   3'- -GCGGCgCCAU--CGACGCCGcg--GGGa---GG- -5'
13938 5' -64.4 NC_003521.1 + 224816 0.67 0.588873
Target:  5'- uGCCGCuGGUuccuGCUG-GGCGCCgugggugCCUaCCg -3'
miRNA:   3'- gCGGCG-CCAu---CGACgCCGCGG-------GGA-GG- -5'
13938 5' -64.4 NC_003521.1 + 144688 0.67 0.588873
Target:  5'- cCGuCCGCGGUGGCcaacaGGCGCUcgagguuCUUCCu -3'
miRNA:   3'- -GC-GGCGCCAUCGacg--CCGCGG-------GGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.