Results 121 - 140 of 269 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
13938 | 5' | -64.4 | NC_003521.1 | + | 32888 | 0.68 | 0.562028 |
Target: 5'- gCGCCGcCGGU-GCUGCcgccGUGCCCg-CCg -3' miRNA: 3'- -GCGGC-GCCAuCGACGc---CGCGGGgaGG- -5' |
|||||||
13938 | 5' | -64.4 | NC_003521.1 | + | 117284 | 0.68 | 0.562028 |
Target: 5'- gGCCGUGGU-GC--CGGCuCCCCUCa -3' miRNA: 3'- gCGGCGCCAuCGacGCCGcGGGGAGg -5' |
|||||||
13938 | 5' | -64.4 | NC_003521.1 | + | 160509 | 0.68 | 0.562028 |
Target: 5'- cCGCgGCGGgaggaGGggGCGGCaGCCuCCUCg -3' miRNA: 3'- -GCGgCGCCa----UCgaCGCCG-CGG-GGAGg -5' |
|||||||
13938 | 5' | -64.4 | NC_003521.1 | + | 37416 | 0.68 | 0.562028 |
Target: 5'- gGCCugacCGuGUGGC-GCGGCGCCgagCCUCUg -3' miRNA: 3'- gCGGc---GC-CAUCGaCGCCGCGG---GGAGG- -5' |
|||||||
13938 | 5' | -64.4 | NC_003521.1 | + | 33930 | 0.68 | 0.561108 |
Target: 5'- gGCCacggcCGGUcGCUGgaucccgcucugcUGGcCGCCCCUCCa -3' miRNA: 3'- gCGGc----GCCAuCGAC-------------GCC-GCGGGGAGG- -5' |
|||||||
13938 | 5' | -64.4 | NC_003521.1 | + | 45576 | 0.68 | 0.556513 |
Target: 5'- aGCCGuCGGccagcucgGGCUccggcuccuggcccaGCGGCGCCCgguccaugauCUCCa -3' miRNA: 3'- gCGGC-GCCa-------UCGA---------------CGCCGCGGG----------GAGG- -5' |
|||||||
13938 | 5' | -64.4 | NC_003521.1 | + | 28240 | 0.68 | 0.552845 |
Target: 5'- uGCCGCcGUGGCcGUGaGCGCCgCCUg- -3' miRNA: 3'- gCGGCGcCAUCGaCGC-CGCGG-GGAgg -5' |
|||||||
13938 | 5' | -64.4 | NC_003521.1 | + | 85476 | 0.68 | 0.552845 |
Target: 5'- uCGUCGUGGUGccGgUGCccGCGCCCCcgCCg -3' miRNA: 3'- -GCGGCGCCAU--CgACGc-CGCGGGGa-GG- -5' |
|||||||
13938 | 5' | -64.4 | NC_003521.1 | + | 226908 | 0.68 | 0.552845 |
Target: 5'- gGCCaGCGc-GGCcuccGCGGC-CCCCUCCg -3' miRNA: 3'- gCGG-CGCcaUCGa---CGCCGcGGGGAGG- -5' |
|||||||
13938 | 5' | -64.4 | NC_003521.1 | + | 138735 | 0.68 | 0.543707 |
Target: 5'- gGCgGCaGGUGGCagaUGUGGCGCCgCCg-- -3' miRNA: 3'- gCGgCG-CCAUCG---ACGCCGCGG-GGagg -5' |
|||||||
13938 | 5' | -64.4 | NC_003521.1 | + | 150041 | 0.68 | 0.543707 |
Target: 5'- aCGCCGUGGcguugaGGCguaccgcGCGGcCGCCCUcgCCg -3' miRNA: 3'- -GCGGCGCCa-----UCGa------CGCC-GCGGGGa-GG- -5' |
|||||||
13938 | 5' | -64.4 | NC_003521.1 | + | 196438 | 0.68 | 0.543707 |
Target: 5'- uCGCC-CGGgucggccGGCUGCcGCGCgaaCCUCCg -3' miRNA: 3'- -GCGGcGCCa------UCGACGcCGCGg--GGAGG- -5' |
|||||||
13938 | 5' | -64.4 | NC_003521.1 | + | 124023 | 0.68 | 0.534619 |
Target: 5'- uGCCGCGGUgcgucagcGGCUGCuuGGCguuguGCUUgUCCg -3' miRNA: 3'- gCGGCGCCA--------UCGACG--CCG-----CGGGgAGG- -5' |
|||||||
13938 | 5' | -64.4 | NC_003521.1 | + | 88242 | 0.68 | 0.534619 |
Target: 5'- aGCCGaaGUAGCgcuugUGCGGCGCCagCUUg -3' miRNA: 3'- gCGGCgcCAUCG-----ACGCCGCGGg-GAGg -5' |
|||||||
13938 | 5' | -64.4 | NC_003521.1 | + | 77939 | 0.68 | 0.534619 |
Target: 5'- gGCaguaGCGGcccacCUGCGcGCGCCCCUgCg -3' miRNA: 3'- gCGg---CGCCauc--GACGC-CGCGGGGAgG- -5' |
|||||||
13938 | 5' | -64.4 | NC_003521.1 | + | 232217 | 0.68 | 0.534619 |
Target: 5'- gGUgGUGGUGGCugUGCGGCGUCUgUUg -3' miRNA: 3'- gCGgCGCCAUCG--ACGCCGCGGGgAGg -5' |
|||||||
13938 | 5' | -64.4 | NC_003521.1 | + | 239120 | 0.68 | 0.534619 |
Target: 5'- aCGCuCG-GGUuuucCUGCGGCGUCCCcgCCu -3' miRNA: 3'- -GCG-GCgCCAuc--GACGCCGCGGGGa-GG- -5' |
|||||||
13938 | 5' | -64.4 | NC_003521.1 | + | 128638 | 0.68 | 0.533713 |
Target: 5'- uGCCGUaGGUGGC--CGGCGCCgacaccgUCUCCu -3' miRNA: 3'- gCGGCG-CCAUCGacGCCGCGG-------GGAGG- -5' |
|||||||
13938 | 5' | -64.4 | NC_003521.1 | + | 162594 | 0.68 | 0.52829 |
Target: 5'- gGCUGCGGUGGCacucgcucgacagccUccgacgaGCGccGCGCCCgCUCCg -3' miRNA: 3'- gCGGCGCCAUCG---------------A-------CGC--CGCGGG-GAGG- -5' |
|||||||
13938 | 5' | -64.4 | NC_003521.1 | + | 202325 | 0.68 | 0.525586 |
Target: 5'- uGCUGCuGGaacuGCUGcCGGUGCUaCCUCCu -3' miRNA: 3'- gCGGCG-CCau--CGAC-GCCGCGG-GGAGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home