miRNA display CGI


Results 41 - 60 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13938 5' -64.4 NC_003521.1 + 54431 0.86 0.03817
Target:  5'- gCGCgGCGGUGGCggagGCGGCgGCCUCUCCa -3'
miRNA:   3'- -GCGgCGCCAUCGa---CGCCG-CGGGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 56252 0.74 0.269346
Target:  5'- aCGCCGUGGaccGGCUGCGGC-CCCUgcaCa -3'
miRNA:   3'- -GCGGCGCCa--UCGACGCCGcGGGGag-G- -5'
13938 5' -64.4 NC_003521.1 + 56724 0.71 0.368545
Target:  5'- gGCCGUGGc----GCGGCGCCUCUCg -3'
miRNA:   3'- gCGGCGCCaucgaCGCCGCGGGGAGg -5'
13938 5' -64.4 NC_003521.1 + 57181 0.67 0.593527
Target:  5'- uGCUggagGCGGU-GCUGCGGCGCugucgcgacggccagCUCUCg -3'
miRNA:   3'- gCGG----CGCCAuCGACGCCGCG---------------GGGAGg -5'
13938 5' -64.4 NC_003521.1 + 58318 0.66 0.684113
Target:  5'- uCGCCGUaucgGGUGGCcgccagcagcaacacGCGcGCGCCCUcgucgUCCu -3'
miRNA:   3'- -GCGGCG----CCAUCGa--------------CGC-CGCGGGG-----AGG- -5'
13938 5' -64.4 NC_003521.1 + 59594 0.68 0.571252
Target:  5'- gCGCCaagaaggaCGGUAGUgGCGGCGgCCCCg-- -3'
miRNA:   3'- -GCGGc-------GCCAUCGaCGCCGC-GGGGagg -5'
13938 5' -64.4 NC_003521.1 + 59881 0.71 0.398906
Target:  5'- aGCCGCGGUcGCcGcCGGgGCCgCCgCCa -3'
miRNA:   3'- gCGGCGCCAuCGaC-GCCgCGG-GGaGG- -5'
13938 5' -64.4 NC_003521.1 + 61848 0.77 0.164103
Target:  5'- gCGCCGCGGaa-CcGCGGCGCCUgUCCa -3'
miRNA:   3'- -GCGGCGCCaucGaCGCCGCGGGgAGG- -5'
13938 5' -64.4 NC_003521.1 + 62107 0.79 0.115168
Target:  5'- gCGCCGCGGUucc-GCGGCGCCCUcCCa -3'
miRNA:   3'- -GCGGCGCCAucgaCGCCGCGGGGaGG- -5'
13938 5' -64.4 NC_003521.1 + 62503 0.69 0.490072
Target:  5'- aGCCGCGcGUccAGCcG-GGCGC-CCUCCu -3'
miRNA:   3'- gCGGCGC-CA--UCGaCgCCGCGgGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 63068 0.67 0.627171
Target:  5'- aCGaCCGCGaccccGUacAGCUGCgccGGCGCgcugcccgCCCUCCa -3'
miRNA:   3'- -GC-GGCGC-----CA--UCGACG---CCGCG--------GGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 63320 0.68 0.571252
Target:  5'- gGUCGCGGUcgucgccagGGCcGaCGGgGCCUgUCCg -3'
miRNA:   3'- gCGGCGCCA---------UCGaC-GCCgCGGGgAGG- -5'
13938 5' -64.4 NC_003521.1 + 65389 0.68 0.51661
Target:  5'- gCGCCaucuguCGGUacucguccAGCUGuCGGCGCCgCUCUu -3'
miRNA:   3'- -GCGGc-----GCCA--------UCGAC-GCCGCGGgGAGG- -5'
13938 5' -64.4 NC_003521.1 + 68421 0.73 0.281224
Target:  5'- -cCCGCGGcgacGGCUccGcCGGCGCCCCUCa -3'
miRNA:   3'- gcGGCGCCa---UCGA--C-GCCGCGGGGAGg -5'
13938 5' -64.4 NC_003521.1 + 70028 0.67 0.617809
Target:  5'- uCGCCGUGGUAuGCcgucagUGCGGCcauuGCCUCaaUCUg -3'
miRNA:   3'- -GCGGCGCCAU-CG------ACGCCG----CGGGG--AGG- -5'
13938 5' -64.4 NC_003521.1 + 70147 0.66 0.636535
Target:  5'- aGCUGCGGcgAGC-GCGGCuGCCUaucacgagUCCa -3'
miRNA:   3'- gCGGCGCCa-UCGaCGCCG-CGGGg-------AGG- -5'
13938 5' -64.4 NC_003521.1 + 70700 0.67 0.627171
Target:  5'- gCGCCGCa--AGCUGCgucGGCGCCUgcgCCg -3'
miRNA:   3'- -GCGGCGccaUCGACG---CCGCGGGga-GG- -5'
13938 5' -64.4 NC_003521.1 + 71264 0.66 0.663653
Target:  5'- cCGCCaacaucggcggagGCGGgGGCcGCGGCacggGCCCCUg- -3'
miRNA:   3'- -GCGG-------------CGCCaUCGaCGCCG----CGGGGAgg -5'
13938 5' -64.4 NC_003521.1 + 71399 0.69 0.481367
Target:  5'- uCGuCCGCGuG-AGCgagGCGGCGgCCCCgaaCCu -3'
miRNA:   3'- -GC-GGCGC-CaUCGa--CGCCGC-GGGGa--GG- -5'
13938 5' -64.4 NC_003521.1 + 72949 0.66 0.683187
Target:  5'- gCGCCGUGGguggacggGGCggaauaGgGGCGCCgC-CCa -3'
miRNA:   3'- -GCGGCGCCa-------UCGa-----CgCCGCGGgGaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.