Results 41 - 60 of 269 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13938 | 5' | -64.4 | NC_003521.1 | + | 54431 | 0.86 | 0.03817 |
Target: 5'- gCGCgGCGGUGGCggagGCGGCgGCCUCUCCa -3' miRNA: 3'- -GCGgCGCCAUCGa---CGCCG-CGGGGAGG- -5' |
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13938 | 5' | -64.4 | NC_003521.1 | + | 56252 | 0.74 | 0.269346 |
Target: 5'- aCGCCGUGGaccGGCUGCGGC-CCCUgcaCa -3' miRNA: 3'- -GCGGCGCCa--UCGACGCCGcGGGGag-G- -5' |
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13938 | 5' | -64.4 | NC_003521.1 | + | 56724 | 0.71 | 0.368545 |
Target: 5'- gGCCGUGGc----GCGGCGCCUCUCg -3' miRNA: 3'- gCGGCGCCaucgaCGCCGCGGGGAGg -5' |
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13938 | 5' | -64.4 | NC_003521.1 | + | 57181 | 0.67 | 0.593527 |
Target: 5'- uGCUggagGCGGU-GCUGCGGCGCugucgcgacggccagCUCUCg -3' miRNA: 3'- gCGG----CGCCAuCGACGCCGCG---------------GGGAGg -5' |
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13938 | 5' | -64.4 | NC_003521.1 | + | 58318 | 0.66 | 0.684113 |
Target: 5'- uCGCCGUaucgGGUGGCcgccagcagcaacacGCGcGCGCCCUcgucgUCCu -3' miRNA: 3'- -GCGGCG----CCAUCGa--------------CGC-CGCGGGG-----AGG- -5' |
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13938 | 5' | -64.4 | NC_003521.1 | + | 59594 | 0.68 | 0.571252 |
Target: 5'- gCGCCaagaaggaCGGUAGUgGCGGCGgCCCCg-- -3' miRNA: 3'- -GCGGc-------GCCAUCGaCGCCGC-GGGGagg -5' |
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13938 | 5' | -64.4 | NC_003521.1 | + | 59881 | 0.71 | 0.398906 |
Target: 5'- aGCCGCGGUcGCcGcCGGgGCCgCCgCCa -3' miRNA: 3'- gCGGCGCCAuCGaC-GCCgCGG-GGaGG- -5' |
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13938 | 5' | -64.4 | NC_003521.1 | + | 61848 | 0.77 | 0.164103 |
Target: 5'- gCGCCGCGGaa-CcGCGGCGCCUgUCCa -3' miRNA: 3'- -GCGGCGCCaucGaCGCCGCGGGgAGG- -5' |
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13938 | 5' | -64.4 | NC_003521.1 | + | 62107 | 0.79 | 0.115168 |
Target: 5'- gCGCCGCGGUucc-GCGGCGCCCUcCCa -3' miRNA: 3'- -GCGGCGCCAucgaCGCCGCGGGGaGG- -5' |
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13938 | 5' | -64.4 | NC_003521.1 | + | 62503 | 0.69 | 0.490072 |
Target: 5'- aGCCGCGcGUccAGCcG-GGCGC-CCUCCu -3' miRNA: 3'- gCGGCGC-CA--UCGaCgCCGCGgGGAGG- -5' |
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13938 | 5' | -64.4 | NC_003521.1 | + | 63068 | 0.67 | 0.627171 |
Target: 5'- aCGaCCGCGaccccGUacAGCUGCgccGGCGCgcugcccgCCCUCCa -3' miRNA: 3'- -GC-GGCGC-----CA--UCGACG---CCGCG--------GGGAGG- -5' |
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13938 | 5' | -64.4 | NC_003521.1 | + | 63320 | 0.68 | 0.571252 |
Target: 5'- gGUCGCGGUcgucgccagGGCcGaCGGgGCCUgUCCg -3' miRNA: 3'- gCGGCGCCA---------UCGaC-GCCgCGGGgAGG- -5' |
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13938 | 5' | -64.4 | NC_003521.1 | + | 65389 | 0.68 | 0.51661 |
Target: 5'- gCGCCaucuguCGGUacucguccAGCUGuCGGCGCCgCUCUu -3' miRNA: 3'- -GCGGc-----GCCA--------UCGAC-GCCGCGGgGAGG- -5' |
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13938 | 5' | -64.4 | NC_003521.1 | + | 68421 | 0.73 | 0.281224 |
Target: 5'- -cCCGCGGcgacGGCUccGcCGGCGCCCCUCa -3' miRNA: 3'- gcGGCGCCa---UCGA--C-GCCGCGGGGAGg -5' |
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13938 | 5' | -64.4 | NC_003521.1 | + | 70028 | 0.67 | 0.617809 |
Target: 5'- uCGCCGUGGUAuGCcgucagUGCGGCcauuGCCUCaaUCUg -3' miRNA: 3'- -GCGGCGCCAU-CG------ACGCCG----CGGGG--AGG- -5' |
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13938 | 5' | -64.4 | NC_003521.1 | + | 70147 | 0.66 | 0.636535 |
Target: 5'- aGCUGCGGcgAGC-GCGGCuGCCUaucacgagUCCa -3' miRNA: 3'- gCGGCGCCa-UCGaCGCCG-CGGGg-------AGG- -5' |
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13938 | 5' | -64.4 | NC_003521.1 | + | 70700 | 0.67 | 0.627171 |
Target: 5'- gCGCCGCa--AGCUGCgucGGCGCCUgcgCCg -3' miRNA: 3'- -GCGGCGccaUCGACG---CCGCGGGga-GG- -5' |
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13938 | 5' | -64.4 | NC_003521.1 | + | 71264 | 0.66 | 0.663653 |
Target: 5'- cCGCCaacaucggcggagGCGGgGGCcGCGGCacggGCCCCUg- -3' miRNA: 3'- -GCGG-------------CGCCaUCGaCGCCG----CGGGGAgg -5' |
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13938 | 5' | -64.4 | NC_003521.1 | + | 71399 | 0.69 | 0.481367 |
Target: 5'- uCGuCCGCGuG-AGCgagGCGGCGgCCCCgaaCCu -3' miRNA: 3'- -GC-GGCGC-CaUCGa--CGCCGC-GGGGa--GG- -5' |
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13938 | 5' | -64.4 | NC_003521.1 | + | 72949 | 0.66 | 0.683187 |
Target: 5'- gCGCCGUGGguggacggGGCggaauaGgGGCGCCgC-CCa -3' miRNA: 3'- -GCGGCGCCa-------UCGa-----CgCCGCGGgGaGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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