miRNA display CGI


Results 61 - 80 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13938 5' -64.4 NC_003521.1 + 73140 0.72 0.33288
Target:  5'- gGCgGgGGcAGCggcgGCGGCGCCgCCUCg -3'
miRNA:   3'- gCGgCgCCaUCGa---CGCCGCGG-GGAGg -5'
13938 5' -64.4 NC_003521.1 + 74184 0.69 0.490072
Target:  5'- gCGCCGCGGc-GCccgGCGcGCGgCCCgacgCCg -3'
miRNA:   3'- -GCGGCGCCauCGa--CGC-CGCgGGGa---GG- -5'
13938 5' -64.4 NC_003521.1 + 74435 0.7 0.439033
Target:  5'- gCGCCGCGGcgcAGCggccaGCGGCaccuggGCCCCguggcgcgCCa -3'
miRNA:   3'- -GCGGCGCCa--UCGa----CGCCG------CGGGGa-------GG- -5'
13938 5' -64.4 NC_003521.1 + 74581 0.71 0.391167
Target:  5'- aCGgaGCGGcGGC-GCGGCGUCCCgcggCCg -3'
miRNA:   3'- -GCggCGCCaUCGaCGCCGCGGGGa---GG- -5'
13938 5' -64.4 NC_003521.1 + 74849 0.73 0.293514
Target:  5'- gGCCGCGGgacGCcGCGcCGCCgCUCCg -3'
miRNA:   3'- gCGGCGCCau-CGaCGCcGCGGgGAGG- -5'
13938 5' -64.4 NC_003521.1 + 75548 0.67 0.626234
Target:  5'- aGCgGCGccGGCgGCGGCuacgccaGCgCCCUCCu -3'
miRNA:   3'- gCGgCGCcaUCGaCGCCG-------CG-GGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 77939 0.68 0.534619
Target:  5'- gGCaguaGCGGcccacCUGCGcGCGCCCCUgCg -3'
miRNA:   3'- gCGg---CGCCauc--GACGC-CGCGGGGAgG- -5'
13938 5' -64.4 NC_003521.1 + 78743 0.66 0.664586
Target:  5'- gCGaCUGCGGgcGUggGCGcGCaGCCCC-CCg -3'
miRNA:   3'- -GC-GGCGCCauCGa-CGC-CG-CGGGGaGG- -5'
13938 5' -64.4 NC_003521.1 + 79239 0.73 0.293514
Target:  5'- uGcCCGCGGUAGC-GCGGCGacacgUUCUCCg -3'
miRNA:   3'- gC-GGCGCCAUCGaCGCCGCg----GGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 80760 0.67 0.589803
Target:  5'- aGCCGUGGgcGGC-GCGGUGgC-CUCCg -3'
miRNA:   3'- gCGGCGCCa-UCGaCGCCGCgGgGAGG- -5'
13938 5' -64.4 NC_003521.1 + 80979 0.69 0.472737
Target:  5'- gGgCGCGaGUAGCaGCGGCcCUUCUCCu -3'
miRNA:   3'- gCgGCGC-CAUCGaCGCCGcGGGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 82923 0.69 0.461637
Target:  5'- uGCC-UGGUAgucugcguuagcuuGCUGCGGaCGCCcuCCUCCg -3'
miRNA:   3'- gCGGcGCCAU--------------CGACGCC-GCGG--GGAGG- -5'
13938 5' -64.4 NC_003521.1 + 83749 0.74 0.25563
Target:  5'- -aCCGCGGggGGCcugggacagggugGCGGCGCCCC-CCg -3'
miRNA:   3'- gcGGCGCCa-UCGa------------CGCCGCGGGGaGG- -5'
13938 5' -64.4 NC_003521.1 + 84796 0.68 0.570328
Target:  5'- gGCUGCaGGgcuuGCUgugcaaccauauaGCGGUgcaucGCCCCUCCa -3'
miRNA:   3'- gCGGCG-CCau--CGA-------------CGCCG-----CGGGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 85476 0.68 0.552845
Target:  5'- uCGUCGUGGUGccGgUGCccGCGCCCCcgCCg -3'
miRNA:   3'- -GCGGCGCCAU--CgACGc-CGCGGGGa-GG- -5'
13938 5' -64.4 NC_003521.1 + 85657 0.66 0.645896
Target:  5'- aGCCGCGGccgccAGCUGUuccgagccGGCGUCCagcacgcgCCg -3'
miRNA:   3'- gCGGCGCCa----UCGACG--------CCGCGGGga------GG- -5'
13938 5' -64.4 NC_003521.1 + 85844 0.69 0.47618
Target:  5'- cCGUgGUGGUGGUggggggcggcggcgGCGGCGCCUCaggCCc -3'
miRNA:   3'- -GCGgCGCCAUCGa-------------CGCCGCGGGGa--GG- -5'
13938 5' -64.4 NC_003521.1 + 87059 0.66 0.645896
Target:  5'- gGUCGCGGUAcguacGCgGUGGUGCCCa--- -3'
miRNA:   3'- gCGGCGCCAU-----CGaCGCCGCGGGgagg -5'
13938 5' -64.4 NC_003521.1 + 88065 0.8 0.107172
Target:  5'- gGUCGCGGUGGUcgGCGGCGCCCgUgaCCa -3'
miRNA:   3'- gCGGCGCCAUCGa-CGCCGCGGGgA--GG- -5'
13938 5' -64.4 NC_003521.1 + 88242 0.68 0.534619
Target:  5'- aGCCGaaGUAGCgcuugUGCGGCGCCagCUUg -3'
miRNA:   3'- gCGGCgcCAUCG-----ACGCCGCGGg-GAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.