miRNA display CGI


Results 101 - 120 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13938 5' -64.4 NC_003521.1 + 112737 0.66 0.683187
Target:  5'- uGCCGaaguaGGUGGCcccGCcgGGCGCgCCCaCCa -3'
miRNA:   3'- gCGGCg----CCAUCGa--CG--CCGCG-GGGaGG- -5'
13938 5' -64.4 NC_003521.1 + 113097 0.68 0.562028
Target:  5'- cCGCCGUGGUgcAGgaGCGGC-UCUCgggCCa -3'
miRNA:   3'- -GCGGCGCCA--UCgaCGCCGcGGGGa--GG- -5'
13938 5' -64.4 NC_003521.1 + 113125 0.72 0.319341
Target:  5'- aGCCGCGGgagcAGCUGgGGCaGCUCggCCa -3'
miRNA:   3'- gCGGCGCCa---UCGACgCCG-CGGGgaGG- -5'
13938 5' -64.4 NC_003521.1 + 113199 0.66 0.680404
Target:  5'- gGUCGCGGUAgGCguaguaguugcccgUGaCGGgGCCCUcCCa -3'
miRNA:   3'- gCGGCGCCAU-CG--------------AC-GCCgCGGGGaGG- -5'
13938 5' -64.4 NC_003521.1 + 113256 0.67 0.580512
Target:  5'- uGcCCG-GGUGGUaGUGGCGCCCg-CCg -3'
miRNA:   3'- gC-GGCgCCAUCGaCGCCGCGGGgaGG- -5'
13938 5' -64.4 NC_003521.1 + 114312 0.69 0.464186
Target:  5'- aCGCCGCGGaccugGGCuucUGCcgccuGGCGCUCUUCg -3'
miRNA:   3'- -GCGGCGCCa----UCG---ACG-----CCGCGGGGAGg -5'
13938 5' -64.4 NC_003521.1 + 114958 0.68 0.51661
Target:  5'- aGCgGCGGcuGCUGCGGCGUCagucgCCu -3'
miRNA:   3'- gCGgCGCCauCGACGCCGCGGgga--GG- -5'
13938 5' -64.4 NC_003521.1 + 115659 0.67 0.617809
Target:  5'- gGCCGUGGcGGCcGCccGCGCCCUgcacaugCCg -3'
miRNA:   3'- gCGGCGCCaUCGaCGc-CGCGGGGa------GG- -5'
13938 5' -64.4 NC_003521.1 + 116713 0.66 0.654314
Target:  5'- gCGCCguccacuuccacgGCGGUcccGgaGuCGGCGCCCUUCa -3'
miRNA:   3'- -GCGG-------------CGCCAu--CgaC-GCCGCGGGGAGg -5'
13938 5' -64.4 NC_003521.1 + 116873 0.66 0.683187
Target:  5'- gCGCgCGCaGUGGCgcggcugcgGCGGCGCgCCg-- -3'
miRNA:   3'- -GCG-GCGcCAUCGa--------CGCCGCGgGGagg -5'
13938 5' -64.4 NC_003521.1 + 116974 0.71 0.367806
Target:  5'- cCGCCGUGGaAGUgGaCGGCGCUuccgaggCCUCCa -3'
miRNA:   3'- -GCGGCGCCaUCGaC-GCCGCGG-------GGAGG- -5'
13938 5' -64.4 NC_003521.1 + 117236 0.75 0.215955
Target:  5'- gGCCGCGGcGGCUccCGGCGCCgCCgCCa -3'
miRNA:   3'- gCGGCGCCaUCGAc-GCCGCGG-GGaGG- -5'
13938 5' -64.4 NC_003521.1 + 117284 0.68 0.562028
Target:  5'- gGCCGUGGU-GC--CGGCuCCCCUCa -3'
miRNA:   3'- gCGGCGCCAuCGacGCCGcGGGGAGg -5'
13938 5' -64.4 NC_003521.1 + 117375 0.69 0.472737
Target:  5'- -cCCGCGGUccccGCUaCGGCGCCuCCgUCCu -3'
miRNA:   3'- gcGGCGCCAu---CGAcGCCGCGG-GG-AGG- -5'
13938 5' -64.4 NC_003521.1 + 117376 0.66 0.683187
Target:  5'- gGCgGCGGcugAGCgGCGGaggcgGCCUCgUCCg -3'
miRNA:   3'- gCGgCGCCa--UCGaCGCCg----CGGGG-AGG- -5'
13938 5' -64.4 NC_003521.1 + 117522 0.69 0.481367
Target:  5'- aCGaCgGCGGUGGCgggauggcgGCGGCGCCgggagCCgCCg -3'
miRNA:   3'- -GC-GgCGCCAUCGa--------CGCCGCGG-----GGaGG- -5'
13938 5' -64.4 NC_003521.1 + 118923 0.81 0.084134
Target:  5'- gCGCCGCGGcgugGGCgGCGGCGUCCCgucagggCCa -3'
miRNA:   3'- -GCGGCGCCa---UCGaCGCCGCGGGGa------GG- -5'
13938 5' -64.4 NC_003521.1 + 119050 0.72 0.339806
Target:  5'- gCGUCGgGGU-GCUG-GaGCGCUCCUCCu -3'
miRNA:   3'- -GCGGCgCCAuCGACgC-CGCGGGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 119802 0.67 0.589803
Target:  5'- gCGCCGaGGUGguGCUGCGGCacaaCCCguacCCg -3'
miRNA:   3'- -GCGGCgCCAU--CGACGCCGcg--GGGa---GG- -5'
13938 5' -64.4 NC_003521.1 + 122938 0.68 0.51661
Target:  5'- aGCUGuCGGU-GCUG-GGCGCCUcgaucgcgCUCCa -3'
miRNA:   3'- gCGGC-GCCAuCGACgCCGCGGG--------GAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.