miRNA display CGI


Results 121 - 140 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13938 5' -64.4 NC_003521.1 + 123088 0.67 0.589803
Target:  5'- aCGaCGaCGGUAGCgGCGGCGUgUCgcugCCg -3'
miRNA:   3'- -GCgGC-GCCAUCGaCGCCGCGgGGa---GG- -5'
13938 5' -64.4 NC_003521.1 + 123880 0.69 0.472737
Target:  5'- aCGCCGCu---GCUacgGCGGCuGCCCCUgCg -3'
miRNA:   3'- -GCGGCGccauCGA---CGCCG-CGGGGAgG- -5'
13938 5' -64.4 NC_003521.1 + 124023 0.68 0.534619
Target:  5'- uGCCGCGGUgcgucagcGGCUGCuuGGCguuguGCUUgUCCg -3'
miRNA:   3'- gCGGCGCCA--------UCGACG--CCG-----CGGGgAGG- -5'
13938 5' -64.4 NC_003521.1 + 124677 0.68 0.568481
Target:  5'- gCGUCGCGGUaggugauggucuuuAGCUGgugcaCGGcCGCCuuuaCCUCCu -3'
miRNA:   3'- -GCGGCGCCA--------------UCGAC-----GCC-GCGG----GGAGG- -5'
13938 5' -64.4 NC_003521.1 + 125378 0.69 0.490072
Target:  5'- aGCUGaCGGcGGCcGUGGUGCCCaUCCc -3'
miRNA:   3'- gCGGC-GCCaUCGaCGCCGCGGGgAGG- -5'
13938 5' -64.4 NC_003521.1 + 126276 0.66 0.6739
Target:  5'- gGUaCGUGGU-GCUGaugucGCGCUCCUCCu -3'
miRNA:   3'- gCG-GCGCCAuCGACgc---CGCGGGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 126793 0.67 0.589803
Target:  5'- uGCgCGUGGUccAGCUcCGcGCGCaCCUCCa -3'
miRNA:   3'- gCG-GCGCCA--UCGAcGC-CGCGgGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 126952 0.67 0.59912
Target:  5'- gGUCGa-GUAcuGCcugGCGGUGCCCUUCCa -3'
miRNA:   3'- gCGGCgcCAU--CGa--CGCCGCGGGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 127010 0.69 0.481367
Target:  5'- aCGUgGCGGUGcccgacgacgccGCcGCGGUGCCCgUCg -3'
miRNA:   3'- -GCGgCGCCAU------------CGaCGCCGCGGGgAGg -5'
13938 5' -64.4 NC_003521.1 + 127219 0.67 0.627171
Target:  5'- uCGUCGuCGcUGGC-GCGGUGgUCCUCCa -3'
miRNA:   3'- -GCGGC-GCcAUCGaCGCCGCgGGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 128132 0.67 0.618745
Target:  5'- aCGCCGCgcauccugguGGgcaaccugcccgacgGGCUGgcgcCGGgGCCCUUCCa -3'
miRNA:   3'- -GCGGCG----------CCa--------------UCGAC----GCCgCGGGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 128638 0.68 0.533713
Target:  5'- uGCCGUaGGUGGC--CGGCGCCgacaccgUCUCCu -3'
miRNA:   3'- gCGGCG-CCAUCGacGCCGCGG-------GGAGG- -5'
13938 5' -64.4 NC_003521.1 + 129497 0.74 0.26356
Target:  5'- uGCCGCGcGUGGCcaGCGGCGCCggaCUgCCc -3'
miRNA:   3'- gCGGCGC-CAUCGa-CGCCGCGGg--GA-GG- -5'
13938 5' -64.4 NC_003521.1 + 129971 0.67 0.608458
Target:  5'- gGCCGCGGccGGCagaaGCgGGCGUCCUcgCCc -3'
miRNA:   3'- gCGGCGCCa-UCGa---CG-CCGCGGGGa-GG- -5'
13938 5' -64.4 NC_003521.1 + 129995 0.67 0.627171
Target:  5'- cCGCUGCGccGGCgGCGGCGCgCaacggCCg -3'
miRNA:   3'- -GCGGCGCcaUCGaCGCCGCGgGga---GG- -5'
13938 5' -64.4 NC_003521.1 + 130317 0.75 0.21547
Target:  5'- gGCCGCGG-AGacgUGCGuggccacGUGCCCCUCCa -3'
miRNA:   3'- gCGGCGCCaUCg--ACGC-------CGCGGGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 130400 0.7 0.455717
Target:  5'- gGUgGCGGcAGCgGCGGCGCCgCCg-- -3'
miRNA:   3'- gCGgCGCCaUCGaCGCCGCGG-GGagg -5'
13938 5' -64.4 NC_003521.1 + 132035 0.67 0.608458
Target:  5'- uGCUGCGcucGCUGCGGaucacCGCCugguCCUCCa -3'
miRNA:   3'- gCGGCGCcauCGACGCC-----GCGG----GGAGG- -5'
13938 5' -64.4 NC_003521.1 + 132434 0.68 0.51661
Target:  5'- aCGCCGCuGGUAGCgGUGGUgggcuguucgGCgCgUCCg -3'
miRNA:   3'- -GCGGCG-CCAUCGaCGCCG----------CGgGgAGG- -5'
13938 5' -64.4 NC_003521.1 + 133499 0.71 0.391167
Target:  5'- gCGCCGCu---GCUGCGGgGCCCaacCCg -3'
miRNA:   3'- -GCGGCGccauCGACGCCgCGGGga-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.