miRNA display CGI


Results 141 - 160 of 269 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13938 5' -64.4 NC_003521.1 + 133770 0.72 0.317346
Target:  5'- uCGCCGCGGguugggccccgcAGCaGCGGCGCCaggugauCCUCg -3'
miRNA:   3'- -GCGGCGCCa-----------UCGaCGCCGCGG-------GGAGg -5'
13938 5' -64.4 NC_003521.1 + 134229 0.67 0.59912
Target:  5'- gGCCGa-GUAGCUGCccGCGCcgCCCUCg -3'
miRNA:   3'- gCGGCgcCAUCGACGc-CGCG--GGGAGg -5'
13938 5' -64.4 NC_003521.1 + 135018 0.68 0.571252
Target:  5'- uCGCCcuucuCGGUgaAGCUGUgcaGGUGCUCCUCg -3'
miRNA:   3'- -GCGGc----GCCA--UCGACG---CCGCGGGGAGg -5'
13938 5' -64.4 NC_003521.1 + 135619 0.65 0.691514
Target:  5'- cCGCCGCGGagacGGCgcgcGCGGgagggaggcaaccCGCCCgaCCc -3'
miRNA:   3'- -GCGGCGCCa---UCGa---CGCC-------------GCGGGgaGG- -5'
13938 5' -64.4 NC_003521.1 + 136714 0.66 0.645896
Target:  5'- aCGCCGCcgaGGaUGGCaGC-GCGCCgCCUuCCg -3'
miRNA:   3'- -GCGGCG---CC-AUCGaCGcCGCGG-GGA-GG- -5'
13938 5' -64.4 NC_003521.1 + 137164 0.7 0.447332
Target:  5'- gGCCGCGGccGCaGCGGCcGCCgCCgagCUg -3'
miRNA:   3'- gCGGCGCCauCGaCGCCG-CGG-GGa--GG- -5'
13938 5' -64.4 NC_003521.1 + 137298 0.69 0.507698
Target:  5'- aGCUGCgGGUGGCgcggcugcugcGCGGCGaCCCCg-- -3'
miRNA:   3'- gCGGCG-CCAUCGa----------CGCCGC-GGGGagg -5'
13938 5' -64.4 NC_003521.1 + 137743 0.73 0.299814
Target:  5'- gCGCCGCGacacGC--CGGCGCCCUUCCa -3'
miRNA:   3'- -GCGGCGCcau-CGacGCCGCGGGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 137842 0.69 0.472737
Target:  5'- aCGCCGCG---GCUG-GGcCGCCCCgCCa -3'
miRNA:   3'- -GCGGCGCcauCGACgCC-GCGGGGaGG- -5'
13938 5' -64.4 NC_003521.1 + 138069 0.8 0.104625
Target:  5'- cCGCCGCGGacAGCUGaGGCGCuggCCCUCCc -3'
miRNA:   3'- -GCGGCGCCa-UCGACgCCGCG---GGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 138093 0.66 0.64028
Target:  5'- aGCCGCGGcgugAGCgccuuaauaaugcaGCuGCGCUCgUCCg -3'
miRNA:   3'- gCGGCGCCa---UCGa-------------CGcCGCGGGgAGG- -5'
13938 5' -64.4 NC_003521.1 + 138317 0.67 0.617809
Target:  5'- cCGCgGCGGUcGCggGCGacccaCGCCCCgugcgCCg -3'
miRNA:   3'- -GCGgCGCCAuCGa-CGCc----GCGGGGa----GG- -5'
13938 5' -64.4 NC_003521.1 + 138735 0.68 0.543707
Target:  5'- gGCgGCaGGUGGCagaUGUGGCGCCgCCg-- -3'
miRNA:   3'- gCGgCG-CCAUCG---ACGCCGCGG-GGagg -5'
13938 5' -64.4 NC_003521.1 + 140185 0.67 0.608458
Target:  5'- gGCCGUGccccgAGgaGCaGCGCgCCUCCu -3'
miRNA:   3'- gCGGCGCca---UCgaCGcCGCGgGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 140223 0.68 0.571252
Target:  5'- uCGCCGUGc-AGCaugaugGCGGC-UCCCUCCg -3'
miRNA:   3'- -GCGGCGCcaUCGa-----CGCCGcGGGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 141143 0.73 0.281224
Target:  5'- cCGCaCGCaGGggGGCgGCGGCGCCUCggCCg -3'
miRNA:   3'- -GCG-GCG-CCa-UCGaCGCCGCGGGGa-GG- -5'
13938 5' -64.4 NC_003521.1 + 141152 0.66 0.664586
Target:  5'- gGCCGCGaGaAGaa-CGGCuGCCCCUUCc -3'
miRNA:   3'- gCGGCGC-CaUCgacGCCG-CGGGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 141298 0.69 0.472737
Target:  5'- aGgUGCaGGU-GCggGCGGCGCCCCggagCCc -3'
miRNA:   3'- gCgGCG-CCAuCGa-CGCCGCGGGGa---GG- -5'
13938 5' -64.4 NC_003521.1 + 141367 0.66 0.6739
Target:  5'- gGCgGCGGUcGGUgacGCGGUGCCCg--- -3'
miRNA:   3'- gCGgCGCCA-UCGa--CGCCGCGGGgagg -5'
13938 5' -64.4 NC_003521.1 + 142359 0.7 0.447332
Target:  5'- cCGCCGCGGccGCcGCcGC-CUCCUCCa -3'
miRNA:   3'- -GCGGCGCCauCGaCGcCGcGGGGAGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.