miRNA display CGI


Results 41 - 60 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13938 5' -64.4 NC_003521.1 + 204084 0.68 0.571252
Target:  5'- aCGUCGUGGgccacguGCaccugGUGGCGCCacugcgCCUCCa -3'
miRNA:   3'- -GCGGCGCCau-----CGa----CGCCGCGG------GGAGG- -5'
13938 5' -64.4 NC_003521.1 + 202377 0.67 0.596323
Target:  5'- cCGUCcCGGUaccugcgccAGCUGCGGUauuagaggcgccggGCCCCgUCCc -3'
miRNA:   3'- -GCGGcGCCA---------UCGACGCCG--------------CGGGG-AGG- -5'
13938 5' -64.4 NC_003521.1 + 202325 0.68 0.525586
Target:  5'- uGCUGCuGGaacuGCUGcCGGUGCUaCCUCCu -3'
miRNA:   3'- gCGGCG-CCau--CGAC-GCCGCGG-GGAGG- -5'
13938 5' -64.4 NC_003521.1 + 202195 0.68 0.571252
Target:  5'- aCGCuCG-GGUuuucCUGCGGCGUCCCcgCCc -3'
miRNA:   3'- -GCG-GCgCCAuc--GACGCCGCGGGGa-GG- -5'
13938 5' -64.4 NC_003521.1 + 201863 0.68 0.570328
Target:  5'- gGCUcggggacaGCGGUGGCccGCGGCgcguucaGCCCCagCCg -3'
miRNA:   3'- gCGG--------CGCCAUCGa-CGCCG-------CGGGGa-GG- -5'
13938 5' -64.4 NC_003521.1 + 201008 0.66 0.645896
Target:  5'- gCGCCaucgGCGGaGGaccgccCGGCGCCCCgCCg -3'
miRNA:   3'- -GCGG----CGCCaUCgac---GCCGCGGGGaGG- -5'
13938 5' -64.4 NC_003521.1 + 200854 0.7 0.447332
Target:  5'- gGCaGCGGUcGCa--GGCGCCgCCUCCg -3'
miRNA:   3'- gCGgCGCCAuCGacgCCGCGG-GGAGG- -5'
13938 5' -64.4 NC_003521.1 + 198526 0.67 0.580512
Target:  5'- uGCCGCuGGgacggcuaucGCUGCGGCGUCag-CCa -3'
miRNA:   3'- gCGGCG-CCau--------CGACGCCGCGGggaGG- -5'
13938 5' -64.4 NC_003521.1 + 197734 0.66 0.635599
Target:  5'- cCGCCGCGcGUgaacauccgccagAGCaUGCgcuGGCGCCgCCUggCCa -3'
miRNA:   3'- -GCGGCGC-CA-------------UCG-ACG---CCGCGG-GGA--GG- -5'
13938 5' -64.4 NC_003521.1 + 197638 0.67 0.627171
Target:  5'- gGCCGCGaacguGUUGCGGCacGUCCCagucUCCu -3'
miRNA:   3'- gCGGCGCcau--CGACGCCG--CGGGG----AGG- -5'
13938 5' -64.4 NC_003521.1 + 197276 0.66 0.6739
Target:  5'- gGCCGCcucuGUcGCGGCGUCUCUCg -3'
miRNA:   3'- gCGGCGccauCGaCGCCGCGGGGAGg -5'
13938 5' -64.4 NC_003521.1 + 197016 0.67 0.59912
Target:  5'- gGCCGgGGcAGCagacggUGCaGGCGCCgCCgCCa -3'
miRNA:   3'- gCGGCgCCaUCG------ACG-CCGCGG-GGaGG- -5'
13938 5' -64.4 NC_003521.1 + 196975 0.66 0.683187
Target:  5'- uCGCCGcCGGUgaagucGGCcGUcGCuGCUCCUCCu -3'
miRNA:   3'- -GCGGC-GCCA------UCGaCGcCG-CGGGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 196731 0.71 0.398906
Target:  5'- gCGaCgGUGGUGGCgGCGGCGCCUgcaCCg -3'
miRNA:   3'- -GC-GgCGCCAUCGaCGCCGCGGGga-GG- -5'
13938 5' -64.4 NC_003521.1 + 196438 0.68 0.543707
Target:  5'- uCGCC-CGGgucggccGGCUGCcGCGCgaaCCUCCg -3'
miRNA:   3'- -GCGGcGCCa------UCGACGcCGCGg--GGAGG- -5'
13938 5' -64.4 NC_003521.1 + 195997 0.73 0.299814
Target:  5'- aGCCccaGG-AGCUGUGGCGUgucgCCCUCCg -3'
miRNA:   3'- gCGGcg-CCaUCGACGCCGCG----GGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 192723 0.69 0.464186
Target:  5'- cCGCgauaGCGGUGGUuuuuucuuuuucUGCGGCGUCCgCgggCCg -3'
miRNA:   3'- -GCGg---CGCCAUCG------------ACGCCGCGGG-Ga--GG- -5'
13938 5' -64.4 NC_003521.1 + 192306 0.66 0.664586
Target:  5'- cCGuCCGCGGUAGCggcgucgGCGGCaCCgUggguaCCg -3'
miRNA:   3'- -GC-GGCGCCAUCGa------CGCCGcGGgGa----GG- -5'
13938 5' -64.4 NC_003521.1 + 191079 0.71 0.375985
Target:  5'- gCGaCCGUGGUGGCgGCGGCGggcugcguCUCgUCCa -3'
miRNA:   3'- -GC-GGCGCCAUCGaCGCCGC--------GGGgAGG- -5'
13938 5' -64.4 NC_003521.1 + 190901 0.66 0.664586
Target:  5'- -cCCGgGGaAGCUGCcGC-CCCCUCUc -3'
miRNA:   3'- gcGGCgCCaUCGACGcCGcGGGGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.