miRNA display CGI


Results 81 - 100 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13938 5' -64.4 NC_003521.1 + 162594 0.68 0.52829
Target:  5'- gGCUGCGGUGGCacucgcucgacagccUccgacgaGCGccGCGCCCgCUCCg -3'
miRNA:   3'- gCGGCGCCAUCG---------------A-------CGC--CGCGGG-GAGG- -5'
13938 5' -64.4 NC_003521.1 + 162215 0.69 0.464186
Target:  5'- aGCCGCGc-AGU--CGGUGCCUCUCCg -3'
miRNA:   3'- gCGGCGCcaUCGacGCCGCGGGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 160805 0.69 0.48484
Target:  5'- gCGCCGCGucucuGUcuccgcguacgaggaGGCUGCcGC-CCCCUCCu -3'
miRNA:   3'- -GCGGCGC-----CA---------------UCGACGcCGcGGGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 160757 0.75 0.225854
Target:  5'- cCGCCGCGGUcuGCUGUGuccgucuccuCGCCUCUCCu -3'
miRNA:   3'- -GCGGCGCCAu-CGACGCc---------GCGGGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 160509 0.68 0.562028
Target:  5'- cCGCgGCGGgaggaGGggGCGGCaGCCuCCUCg -3'
miRNA:   3'- -GCGgCGCCa----UCgaCGCCG-CGG-GGAGg -5'
13938 5' -64.4 NC_003521.1 + 158245 0.73 0.287317
Target:  5'- uCGCCGCGG--GCgGCGGCGUCgCUaCCa -3'
miRNA:   3'- -GCGGCGCCauCGaCGCCGCGGgGA-GG- -5'
13938 5' -64.4 NC_003521.1 + 156620 0.66 0.6739
Target:  5'- gCGCC-UGGU-GCUGCGcGaCGCCCUgggcuUCCu -3'
miRNA:   3'- -GCGGcGCCAuCGACGC-C-GCGGGG-----AGG- -5'
13938 5' -64.4 NC_003521.1 + 155882 0.67 0.580512
Target:  5'- cCGCCGCcg-AGaacaGCGGuCGCCaCCUCCu -3'
miRNA:   3'- -GCGGCGccaUCga--CGCC-GCGG-GGAGG- -5'
13938 5' -64.4 NC_003521.1 + 154386 0.66 0.6739
Target:  5'- gGCCGCGGcGGCgacgacgagGCGGUGaucgacaUCUUCCc -3'
miRNA:   3'- gCGGCGCCaUCGa--------CGCCGCg------GGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 153496 0.65 0.691514
Target:  5'- uGCCGCGc-AGCUGCgccuccaGGCGCUCgCUgCg -3'
miRNA:   3'- gCGGCGCcaUCGACG-------CCGCGGG-GAgG- -5'
13938 5' -64.4 NC_003521.1 + 153358 0.66 0.683187
Target:  5'- gCGCC-CGGcGGCgugGUGG-GCCCCggcCCg -3'
miRNA:   3'- -GCGGcGCCaUCGa--CGCCgCGGGGa--GG- -5'
13938 5' -64.4 NC_003521.1 + 152355 0.72 0.339806
Target:  5'- aCGCUGCucuGGggccGGCcgggGCGGCGCgCCCUCUa -3'
miRNA:   3'- -GCGGCG---CCa---UCGa---CGCCGCG-GGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 151556 0.66 0.664586
Target:  5'- gCGCgCGuCGGaacccaGGCUGCGG-GCCCaCUCg -3'
miRNA:   3'- -GCG-GC-GCCa-----UCGACGCCgCGGG-GAGg -5'
13938 5' -64.4 NC_003521.1 + 151079 0.66 0.664586
Target:  5'- gGCCGCGccGGCUGCcgucacCGCCCCcgugCCc -3'
miRNA:   3'- gCGGCGCcaUCGACGcc----GCGGGGa---GG- -5'
13938 5' -64.4 NC_003521.1 + 150898 0.66 0.664586
Target:  5'- aCGCCgGCGucaucGaCUGC-GCGCCCUUCCa -3'
miRNA:   3'- -GCGG-CGCcau--C-GACGcCGCGGGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 150568 0.74 0.269346
Target:  5'- gGUgGCGGcGGCgGCGGCGCggcUCCUCCu -3'
miRNA:   3'- gCGgCGCCaUCGaCGCCGCG---GGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 150041 0.68 0.543707
Target:  5'- aCGCCGUGGcguugaGGCguaccgcGCGGcCGCCCUcgCCg -3'
miRNA:   3'- -GCGGCGCCa-----UCGa------CGCC-GCGGGGa-GG- -5'
13938 5' -64.4 NC_003521.1 + 149970 0.71 0.398128
Target:  5'- gGCCGUGGUcagcagcAGCacggGCGGCGCgcaCCCgCCg -3'
miRNA:   3'- gCGGCGCCA-------UCGa---CGCCGCG---GGGaGG- -5'
13938 5' -64.4 NC_003521.1 + 149182 0.8 0.102134
Target:  5'- gCGCUGCGGUGcucgaugccGCgGCGGCGCUCCUCg -3'
miRNA:   3'- -GCGGCGCCAU---------CGaCGCCGCGGGGAGg -5'
13938 5' -64.4 NC_003521.1 + 146935 0.67 0.617809
Target:  5'- aGCUGCGGUcGGCUuCGuuGCCguCCUCCu -3'
miRNA:   3'- gCGGCGCCA-UCGAcGCcgCGG--GGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.