miRNA display CGI


Results 101 - 120 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13938 5' -64.4 NC_003521.1 + 146177 0.7 0.414676
Target:  5'- gGCCGCGaGUugcuGGCcgGCGGaCGgCCCUUCa -3'
miRNA:   3'- gCGGCGC-CA----UCGa-CGCC-GCgGGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 146149 0.66 0.664586
Target:  5'- cCGCCGcCGGcGGCcucgucGuCGGCGCCgCCcgCCg -3'
miRNA:   3'- -GCGGC-GCCaUCGa-----C-GCCGCGG-GGa-GG- -5'
13938 5' -64.4 NC_003521.1 + 145579 0.66 0.683187
Target:  5'- uGCUGCGGcGGCacgacGCGGCGgCCguggCCUCg -3'
miRNA:   3'- gCGGCGCCaUCGa----CGCCGC-GG----GGAGg -5'
13938 5' -64.4 NC_003521.1 + 144688 0.67 0.588873
Target:  5'- cCGuCCGCGGUGGCcaacaGGCGCUcgagguuCUUCCu -3'
miRNA:   3'- -GC-GGCGCCAUCGacg--CCGCGG-------GGAGG- -5'
13938 5' -64.4 NC_003521.1 + 143960 0.7 0.447332
Target:  5'- gCGCgGCGGUAGCUGuCGacgcaCGCCagCUUCCa -3'
miRNA:   3'- -GCGgCGCCAUCGAC-GCc----GCGG--GGAGG- -5'
13938 5' -64.4 NC_003521.1 + 143173 0.68 0.525586
Target:  5'- aCGCCGaCGucgccGGCUGaUGGCGCCgCuCUCCa -3'
miRNA:   3'- -GCGGC-GCca---UCGAC-GCCGCGG-G-GAGG- -5'
13938 5' -64.4 NC_003521.1 + 142934 0.66 0.645896
Target:  5'- uGCCGCcGUcgcuGCUGaCGGCGCUgCgCCg -3'
miRNA:   3'- gCGGCGcCAu---CGAC-GCCGCGGgGaGG- -5'
13938 5' -64.4 NC_003521.1 + 142609 0.72 0.346836
Target:  5'- gGCCGCGGcGGCcgugGCGGCGgCCUCgcgcacCCa -3'
miRNA:   3'- gCGGCGCCaUCGa---CGCCGC-GGGGa-----GG- -5'
13938 5' -64.4 NC_003521.1 + 142575 0.66 0.645896
Target:  5'- uCGCCGUGcccGCcGUGGcCGCCCCcgCCu -3'
miRNA:   3'- -GCGGCGCcauCGaCGCC-GCGGGGa-GG- -5'
13938 5' -64.4 NC_003521.1 + 142359 0.7 0.447332
Target:  5'- cCGCCGCGGccGCcGCcGC-CUCCUCCa -3'
miRNA:   3'- -GCGGCGCCauCGaCGcCGcGGGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 141367 0.66 0.6739
Target:  5'- gGCgGCGGUcGGUgacGCGGUGCCCg--- -3'
miRNA:   3'- gCGgCGCCA-UCGa--CGCCGCGGGgagg -5'
13938 5' -64.4 NC_003521.1 + 141298 0.69 0.472737
Target:  5'- aGgUGCaGGU-GCggGCGGCGCCCCggagCCc -3'
miRNA:   3'- gCgGCG-CCAuCGa-CGCCGCGGGGa---GG- -5'
13938 5' -64.4 NC_003521.1 + 141152 0.66 0.664586
Target:  5'- gGCCGCGaGaAGaa-CGGCuGCCCCUUCc -3'
miRNA:   3'- gCGGCGC-CaUCgacGCCG-CGGGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 141143 0.73 0.281224
Target:  5'- cCGCaCGCaGGggGGCgGCGGCGCCUCggCCg -3'
miRNA:   3'- -GCG-GCG-CCa-UCGaCGCCGCGGGGa-GG- -5'
13938 5' -64.4 NC_003521.1 + 140223 0.68 0.571252
Target:  5'- uCGCCGUGc-AGCaugaugGCGGC-UCCCUCCg -3'
miRNA:   3'- -GCGGCGCcaUCGa-----CGCCGcGGGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 140185 0.67 0.608458
Target:  5'- gGCCGUGccccgAGgaGCaGCGCgCCUCCu -3'
miRNA:   3'- gCGGCGCca---UCgaCGcCGCGgGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 138735 0.68 0.543707
Target:  5'- gGCgGCaGGUGGCagaUGUGGCGCCgCCg-- -3'
miRNA:   3'- gCGgCG-CCAUCG---ACGCCGCGG-GGagg -5'
13938 5' -64.4 NC_003521.1 + 138317 0.67 0.617809
Target:  5'- cCGCgGCGGUcGCggGCGacccaCGCCCCgugcgCCg -3'
miRNA:   3'- -GCGgCGCCAuCGa-CGCc----GCGGGGa----GG- -5'
13938 5' -64.4 NC_003521.1 + 138093 0.66 0.64028
Target:  5'- aGCCGCGGcgugAGCgccuuaauaaugcaGCuGCGCUCgUCCg -3'
miRNA:   3'- gCGGCGCCa---UCGa-------------CGcCGCGGGgAGG- -5'
13938 5' -64.4 NC_003521.1 + 138069 0.8 0.104625
Target:  5'- cCGCCGCGGacAGCUGaGGCGCuggCCCUCCc -3'
miRNA:   3'- -GCGGCGCCa-UCGACgCCGCG---GGGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.