miRNA display CGI


Results 121 - 140 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13938 5' -64.4 NC_003521.1 + 137842 0.69 0.472737
Target:  5'- aCGCCGCG---GCUG-GGcCGCCCCgCCa -3'
miRNA:   3'- -GCGGCGCcauCGACgCC-GCGGGGaGG- -5'
13938 5' -64.4 NC_003521.1 + 137743 0.73 0.299814
Target:  5'- gCGCCGCGacacGC--CGGCGCCCUUCCa -3'
miRNA:   3'- -GCGGCGCcau-CGacGCCGCGGGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 137298 0.69 0.507698
Target:  5'- aGCUGCgGGUGGCgcggcugcugcGCGGCGaCCCCg-- -3'
miRNA:   3'- gCGGCG-CCAUCGa----------CGCCGC-GGGGagg -5'
13938 5' -64.4 NC_003521.1 + 137164 0.7 0.447332
Target:  5'- gGCCGCGGccGCaGCGGCcGCCgCCgagCUg -3'
miRNA:   3'- gCGGCGCCauCGaCGCCG-CGG-GGa--GG- -5'
13938 5' -64.4 NC_003521.1 + 136714 0.66 0.645896
Target:  5'- aCGCCGCcgaGGaUGGCaGC-GCGCCgCCUuCCg -3'
miRNA:   3'- -GCGGCG---CC-AUCGaCGcCGCGG-GGA-GG- -5'
13938 5' -64.4 NC_003521.1 + 135619 0.65 0.691514
Target:  5'- cCGCCGCGGagacGGCgcgcGCGGgagggaggcaaccCGCCCgaCCc -3'
miRNA:   3'- -GCGGCGCCa---UCGa---CGCC-------------GCGGGgaGG- -5'
13938 5' -64.4 NC_003521.1 + 135018 0.68 0.571252
Target:  5'- uCGCCcuucuCGGUgaAGCUGUgcaGGUGCUCCUCg -3'
miRNA:   3'- -GCGGc----GCCA--UCGACG---CCGCGGGGAGg -5'
13938 5' -64.4 NC_003521.1 + 134229 0.67 0.59912
Target:  5'- gGCCGa-GUAGCUGCccGCGCcgCCCUCg -3'
miRNA:   3'- gCGGCgcCAUCGACGc-CGCG--GGGAGg -5'
13938 5' -64.4 NC_003521.1 + 133770 0.72 0.317346
Target:  5'- uCGCCGCGGguugggccccgcAGCaGCGGCGCCaggugauCCUCg -3'
miRNA:   3'- -GCGGCGCCa-----------UCGaCGCCGCGG-------GGAGg -5'
13938 5' -64.4 NC_003521.1 + 133499 0.71 0.391167
Target:  5'- gCGCCGCu---GCUGCGGgGCCCaacCCg -3'
miRNA:   3'- -GCGGCGccauCGACGCCgCGGGga-GG- -5'
13938 5' -64.4 NC_003521.1 + 132434 0.68 0.51661
Target:  5'- aCGCCGCuGGUAGCgGUGGUgggcuguucgGCgCgUCCg -3'
miRNA:   3'- -GCGGCG-CCAUCGaCGCCG----------CGgGgAGG- -5'
13938 5' -64.4 NC_003521.1 + 132035 0.67 0.608458
Target:  5'- uGCUGCGcucGCUGCGGaucacCGCCugguCCUCCa -3'
miRNA:   3'- gCGGCGCcauCGACGCC-----GCGG----GGAGG- -5'
13938 5' -64.4 NC_003521.1 + 130400 0.7 0.455717
Target:  5'- gGUgGCGGcAGCgGCGGCGCCgCCg-- -3'
miRNA:   3'- gCGgCGCCaUCGaCGCCGCGG-GGagg -5'
13938 5' -64.4 NC_003521.1 + 130317 0.75 0.21547
Target:  5'- gGCCGCGG-AGacgUGCGuggccacGUGCCCCUCCa -3'
miRNA:   3'- gCGGCGCCaUCg--ACGC-------CGCGGGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 129995 0.67 0.627171
Target:  5'- cCGCUGCGccGGCgGCGGCGCgCaacggCCg -3'
miRNA:   3'- -GCGGCGCcaUCGaCGCCGCGgGga---GG- -5'
13938 5' -64.4 NC_003521.1 + 129971 0.67 0.608458
Target:  5'- gGCCGCGGccGGCagaaGCgGGCGUCCUcgCCc -3'
miRNA:   3'- gCGGCGCCa-UCGa---CG-CCGCGGGGa-GG- -5'
13938 5' -64.4 NC_003521.1 + 129497 0.74 0.26356
Target:  5'- uGCCGCGcGUGGCcaGCGGCGCCggaCUgCCc -3'
miRNA:   3'- gCGGCGC-CAUCGa-CGCCGCGGg--GA-GG- -5'
13938 5' -64.4 NC_003521.1 + 128638 0.68 0.533713
Target:  5'- uGCCGUaGGUGGC--CGGCGCCgacaccgUCUCCu -3'
miRNA:   3'- gCGGCG-CCAUCGacGCCGCGG-------GGAGG- -5'
13938 5' -64.4 NC_003521.1 + 128132 0.67 0.618745
Target:  5'- aCGCCGCgcauccugguGGgcaaccugcccgacgGGCUGgcgcCGGgGCCCUUCCa -3'
miRNA:   3'- -GCGGCG----------CCa--------------UCGAC----GCCgCGGGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 127219 0.67 0.627171
Target:  5'- uCGUCGuCGcUGGC-GCGGUGgUCCUCCa -3'
miRNA:   3'- -GCGGC-GCcAUCGaCGCCGCgGGGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.