miRNA display CGI


Results 41 - 60 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13938 5' -64.4 NC_003521.1 + 46559 0.78 0.142609
Target:  5'- gCGCCgggugcugaaGCGGUGGUUGCGGUaGCCCUUCUu -3'
miRNA:   3'- -GCGG----------CGCCAUCGACGCCG-CGGGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 88065 0.8 0.107172
Target:  5'- gGUCGCGGUGGUcgGCGGCGCCCgUgaCCa -3'
miRNA:   3'- gCGGCGCCAUCGa-CGCCGCGGGgA--GG- -5'
13938 5' -64.4 NC_003521.1 + 138069 0.8 0.104625
Target:  5'- cCGCCGCGGacAGCUGaGGCGCuggCCCUCCc -3'
miRNA:   3'- -GCGGCGCCa-UCGACgCCGCG---GGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 118923 0.81 0.084134
Target:  5'- gCGCCGCGGcgugGGCgGCGGCGUCCCgucagggCCa -3'
miRNA:   3'- -GCGGCGCCa---UCGaCGCCGCGGGGa------GG- -5'
13938 5' -64.4 NC_003521.1 + 49575 0.82 0.074464
Target:  5'- uGCCGCGugGGCcGCGGCGCCgCCUCCu -3'
miRNA:   3'- gCGGCGCcaUCGaCGCCGCGG-GGAGG- -5'
13938 5' -64.4 NC_003521.1 + 187443 0.73 0.287317
Target:  5'- uCGCCGCGGccugcuccuGCU-CGGUcugucgGCCCCUCCg -3'
miRNA:   3'- -GCGGCGCCau-------CGAcGCCG------CGGGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 79239 0.73 0.293514
Target:  5'- uGcCCGCGGUAGC-GCGGCGacacgUUCUCCg -3'
miRNA:   3'- gC-GGCGCCAUCGaCGCCGCg----GGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 74581 0.71 0.391167
Target:  5'- aCGgaGCGGcGGC-GCGGCGUCCCgcggCCg -3'
miRNA:   3'- -GCggCGCCaUCGaCGCCGCGGGGa---GG- -5'
13938 5' -64.4 NC_003521.1 + 43486 0.71 0.391167
Target:  5'- gGCCGUGcUGGCcGCGGCGgCCaacaUCCg -3'
miRNA:   3'- gCGGCGCcAUCGaCGCCGCgGGg---AGG- -5'
13938 5' -64.4 NC_003521.1 + 133499 0.71 0.391167
Target:  5'- gCGCCGCu---GCUGCGGgGCCCaacCCg -3'
miRNA:   3'- -GCGGCGccauCGACGCCgCGGGga-GG- -5'
13938 5' -64.4 NC_003521.1 + 191079 0.71 0.375985
Target:  5'- gCGaCCGUGGUGGCgGCGGCGggcugcguCUCgUCCa -3'
miRNA:   3'- -GC-GGCGCCAUCGaCGCCGC--------GGGgAGG- -5'
13938 5' -64.4 NC_003521.1 + 180929 0.71 0.375985
Target:  5'- gGCCGCucgauGGUGGC-GCGGUGCCgUagUCCg -3'
miRNA:   3'- gCGGCG-----CCAUCGaCGCCGCGGgG--AGG- -5'
13938 5' -64.4 NC_003521.1 + 223838 0.72 0.339806
Target:  5'- gCGCCugcugucccuGCGGcugcuGCUGCGGCuGUCCCUCg -3'
miRNA:   3'- -GCGG----------CGCCau---CGACGCCG-CGGGGAGg -5'
13938 5' -64.4 NC_003521.1 + 152355 0.72 0.339806
Target:  5'- aCGCUGCucuGGggccGGCcgggGCGGCGCgCCCUCUa -3'
miRNA:   3'- -GCGGCG---CCa---UCGa---CGCCGCG-GGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 119050 0.72 0.339806
Target:  5'- gCGUCGgGGU-GCUG-GaGCGCUCCUCCu -3'
miRNA:   3'- -GCGGCgCCAuCGACgC-CGCGGGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 73140 0.72 0.33288
Target:  5'- gGCgGgGGcAGCggcgGCGGCGCCgCCUCg -3'
miRNA:   3'- gCGgCgCCaUCGa---CGCCGCGG-GGAGg -5'
13938 5' -64.4 NC_003521.1 + 106359 0.72 0.328775
Target:  5'- gGCUGCGGUAGC-GgGGaaccgccaucuccgcCGCCuCCUCCg -3'
miRNA:   3'- gCGGCGCCAUCGaCgCC---------------GCGG-GGAGG- -5'
13938 5' -64.4 NC_003521.1 + 18758 0.73 0.306219
Target:  5'- gCGCCGaCGGgucGCUGCugcgacggcuGGUGCCCC-CCg -3'
miRNA:   3'- -GCGGC-GCCau-CGACG----------CCGCGGGGaGG- -5'
13938 5' -64.4 NC_003521.1 + 226363 0.73 0.299814
Target:  5'- gCGCCGCGGgAGCgGCGGCugacGCCgCCgcagggCCg -3'
miRNA:   3'- -GCGGCGCCaUCGaCGCCG----CGG-GGa-----GG- -5'
13938 5' -64.4 NC_003521.1 + 195997 0.73 0.299814
Target:  5'- aGCCccaGG-AGCUGUGGCGUgucgCCCUCCg -3'
miRNA:   3'- gCGGcg-CCaUCGACGCCGCG----GGGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.