miRNA display CGI


Results 61 - 80 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13938 5' -64.4 NC_003521.1 + 106359 0.72 0.328775
Target:  5'- gGCUGCGGUAGC-GgGGaaccgccaucuccgcCGCCuCCUCCg -3'
miRNA:   3'- gCGGCGCCAUCGaCgCC---------------GCGG-GGAGG- -5'
13938 5' -64.4 NC_003521.1 + 73140 0.72 0.33288
Target:  5'- gGCgGgGGcAGCggcgGCGGCGCCgCCUCg -3'
miRNA:   3'- gCGgCgCCaUCGa---CGCCGCGG-GGAGg -5'
13938 5' -64.4 NC_003521.1 + 43843 0.71 0.398906
Target:  5'- gGCCGCGGgcccGUcacaGGCGCCCCggCCg -3'
miRNA:   3'- gCGGCGCCau--CGacg-CCGCGGGGa-GG- -5'
13938 5' -64.4 NC_003521.1 + 146177 0.7 0.414676
Target:  5'- gGCCGCGaGUugcuGGCcgGCGGaCGgCCCUUCa -3'
miRNA:   3'- gCGGCGC-CA----UCGa-CGCC-GCgGGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 221910 0.7 0.427563
Target:  5'- gGCgCGCGGcgccacccuucggGGCUgccGCGGCGCCUCgUCCu -3'
miRNA:   3'- gCG-GCGCCa------------UCGA---CGCCGCGGGG-AGG- -5'
13938 5' -64.4 NC_003521.1 + 27957 0.7 0.439033
Target:  5'- -aCCGCGGUAGaaacgccagGCGGCGCUCacggCCa -3'
miRNA:   3'- gcGGCGCCAUCga-------CGCCGCGGGga--GG- -5'
13938 5' -64.4 NC_003521.1 + 137164 0.7 0.447332
Target:  5'- gGCCGCGGccGCaGCGGCcGCCgCCgagCUg -3'
miRNA:   3'- gCGGCGCCauCGaCGCCG-CGG-GGa--GG- -5'
13938 5' -64.4 NC_003521.1 + 240462 0.7 0.447332
Target:  5'- gGCaGCGGUcGCa--GGCGCCgCCUCCg -3'
miRNA:   3'- gCGgCGCCAuCGacgCCGCGG-GGAGG- -5'
13938 5' -64.4 NC_003521.1 + 142359 0.7 0.447332
Target:  5'- cCGCCGCGGccGCcGCcGC-CUCCUCCa -3'
miRNA:   3'- -GCGGCGCCauCGaCGcCGcGGGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 96781 0.7 0.455717
Target:  5'- uCGCCGcCGGcAGCaGCGGCGgCgCUCg -3'
miRNA:   3'- -GCGGC-GCCaUCGaCGCCGCgGgGAGg -5'
13938 5' -64.4 NC_003521.1 + 196731 0.71 0.398906
Target:  5'- gCGaCgGUGGUGGCgGCGGCGCCUgcaCCg -3'
miRNA:   3'- -GC-GgCGCCAUCGaCGCCGCGGGga-GG- -5'
13938 5' -64.4 NC_003521.1 + 149970 0.71 0.398128
Target:  5'- gGCCGUGGUcagcagcAGCacggGCGGCGCgcaCCCgCCg -3'
miRNA:   3'- gCGGCGCCA-------UCGa---CGCCGCG---GGGaGG- -5'
13938 5' -64.4 NC_003521.1 + 119050 0.72 0.339806
Target:  5'- gCGUCGgGGU-GCUG-GaGCGCUCCUCCu -3'
miRNA:   3'- -GCGGCgCCAuCGACgC-CGCGGGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 152355 0.72 0.339806
Target:  5'- aCGCUGCucuGGggccGGCcgggGCGGCGCgCCCUCUa -3'
miRNA:   3'- -GCGGCG---CCa---UCGa---CGCCGCG-GGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 223838 0.72 0.339806
Target:  5'- gCGCCugcugucccuGCGGcugcuGCUGCGGCuGUCCCUCg -3'
miRNA:   3'- -GCGG----------CGCCau---CGACGCCG-CGGGGAGg -5'
13938 5' -64.4 NC_003521.1 + 180929 0.71 0.375985
Target:  5'- gGCCGCucgauGGUGGC-GCGGUGCCgUagUCCg -3'
miRNA:   3'- gCGGCG-----CCAUCGaCGCCGCGGgG--AGG- -5'
13938 5' -64.4 NC_003521.1 + 191079 0.71 0.375985
Target:  5'- gCGaCCGUGGUGGCgGCGGCGggcugcguCUCgUCCa -3'
miRNA:   3'- -GC-GGCGCCAUCGaCGCCGC--------GGGgAGG- -5'
13938 5' -64.4 NC_003521.1 + 133499 0.71 0.391167
Target:  5'- gCGCCGCu---GCUGCGGgGCCCaacCCg -3'
miRNA:   3'- -GCGGCGccauCGACGCCgCGGGga-GG- -5'
13938 5' -64.4 NC_003521.1 + 43486 0.71 0.391167
Target:  5'- gGCCGUGcUGGCcGCGGCGgCCaacaUCCg -3'
miRNA:   3'- gCGGCGCcAUCGaCGCCGCgGGg---AGG- -5'
13938 5' -64.4 NC_003521.1 + 74581 0.71 0.391167
Target:  5'- aCGgaGCGGcGGC-GCGGCGUCCCgcggCCg -3'
miRNA:   3'- -GCggCGCCaUCGaCGCCGCGGGGa---GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.