miRNA display CGI


Results 101 - 120 of 269 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13938 5' -64.4 NC_003521.1 + 74184 0.69 0.490072
Target:  5'- gCGCCGCGGc-GCccgGCGcGCGgCCCgacgCCg -3'
miRNA:   3'- -GCGGCGCCauCGa--CGC-CGCgGGGa---GG- -5'
13938 5' -64.4 NC_003521.1 + 216673 0.69 0.496209
Target:  5'- -uCCGCGGUGGUcGCGGCgacGUuauaggcacgaacgCCCUCCg -3'
miRNA:   3'- gcGGCGCCAUCGaCGCCG---CG--------------GGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 223367 0.69 0.49885
Target:  5'- gGCCuuGGUcagcAGCgacaucGCGGCGCCCCgacgcgggCCg -3'
miRNA:   3'- gCGGcgCCA----UCGa-----CGCCGCGGGGa-------GG- -5'
13938 5' -64.4 NC_003521.1 + 137298 0.69 0.507698
Target:  5'- aGCUGCgGGUGGCgcggcugcugcGCGGCGaCCCCg-- -3'
miRNA:   3'- gCGGCG-CCAUCGa----------CGCCGC-GGGGagg -5'
13938 5' -64.4 NC_003521.1 + 35028 0.68 0.51393
Target:  5'- gGCggaCGCGGUugGGCacgcucaugccgUGCGGCGCCaccacacaggucuuCCUCCg -3'
miRNA:   3'- gCG---GCGCCA--UCG------------ACGCCGCGG--------------GGAGG- -5'
13938 5' -64.4 NC_003521.1 + 141298 0.69 0.472737
Target:  5'- aGgUGCaGGU-GCggGCGGCGCCCCggagCCc -3'
miRNA:   3'- gCgGCG-CCAuCGa-CGCCGCGGGGa---GG- -5'
13938 5' -64.4 NC_003521.1 + 204369 0.69 0.467597
Target:  5'- uCGUCGCGGcccAGgaGCGaGCGCaacucgucuccgcggCCCUCCg -3'
miRNA:   3'- -GCGGCGCCa--UCgaCGC-CGCG---------------GGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 43843 0.71 0.398906
Target:  5'- gGCCGCGGgcccGUcacaGGCGCCCCggCCg -3'
miRNA:   3'- gCGGCGCCau--CGacg-CCGCGGGGa-GG- -5'
13938 5' -64.4 NC_003521.1 + 146177 0.7 0.414676
Target:  5'- gGCCGCGaGUugcuGGCcgGCGGaCGgCCCUUCa -3'
miRNA:   3'- gCGGCGC-CA----UCGa-CGCC-GCgGGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 221910 0.7 0.427563
Target:  5'- gGCgCGCGGcgccacccuucggGGCUgccGCGGCGCCUCgUCCu -3'
miRNA:   3'- gCG-GCGCCa------------UCGA---CGCCGCGGGG-AGG- -5'
13938 5' -64.4 NC_003521.1 + 27957 0.7 0.439033
Target:  5'- -aCCGCGGUAGaaacgccagGCGGCGCUCacggCCa -3'
miRNA:   3'- gcGGCGCCAUCga-------CGCCGCGGGga--GG- -5'
13938 5' -64.4 NC_003521.1 + 137164 0.7 0.447332
Target:  5'- gGCCGCGGccGCaGCGGCcGCCgCCgagCUg -3'
miRNA:   3'- gCGGCGCCauCGaCGCCG-CGG-GGa--GG- -5'
13938 5' -64.4 NC_003521.1 + 240462 0.7 0.447332
Target:  5'- gGCaGCGGUcGCa--GGCGCCgCCUCCg -3'
miRNA:   3'- gCGgCGCCAuCGacgCCGCGG-GGAGG- -5'
13938 5' -64.4 NC_003521.1 + 142359 0.7 0.447332
Target:  5'- cCGCCGCGGccGCcGCcGC-CUCCUCCa -3'
miRNA:   3'- -GCGGCGCCauCGaCGcCGcGGGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 96781 0.7 0.455717
Target:  5'- uCGCCGcCGGcAGCaGCGGCGgCgCUCg -3'
miRNA:   3'- -GCGGC-GCCaUCGaCGCCGCgGgGAGg -5'
13938 5' -64.4 NC_003521.1 + 114312 0.69 0.464186
Target:  5'- aCGCCGCGGaccugGGCuucUGCcgccuGGCGCUCUUCg -3'
miRNA:   3'- -GCGGCGCCa----UCG---ACG-----CCGCGGGGAGg -5'
13938 5' -64.4 NC_003521.1 + 162215 0.69 0.464186
Target:  5'- aGCCGCGc-AGU--CGGUGCCUCUCCg -3'
miRNA:   3'- gCGGCGCcaUCGacGCCGCGGGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 192723 0.69 0.464186
Target:  5'- cCGCgauaGCGGUGGUuuuuucuuuuucUGCGGCGUCCgCgggCCg -3'
miRNA:   3'- -GCGg---CGCCAUCG------------ACGCCGCGGG-Ga--GG- -5'
13938 5' -64.4 NC_003521.1 + 164426 0.69 0.464186
Target:  5'- cCGCCGCuGGU-GCUaGCaGCGCCaCCgcggCCg -3'
miRNA:   3'- -GCGGCG-CCAuCGA-CGcCGCGG-GGa---GG- -5'
13938 5' -64.4 NC_003521.1 + 36061 0.69 0.464186
Target:  5'- cCGCCGCcgacacaacagGGcGGCgGCGGCGCCUCcaucaCCa -3'
miRNA:   3'- -GCGGCG-----------CCaUCGaCGCCGCGGGGa----GG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.