miRNA display CGI


Results 121 - 140 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13938 5' -64.4 NC_003521.1 + 240462 0.7 0.447332
Target:  5'- gGCaGCGGUcGCa--GGCGCCgCCUCCg -3'
miRNA:   3'- gCGgCGCCAuCGacgCCGCGG-GGAGG- -5'
13938 5' -64.4 NC_003521.1 + 142359 0.7 0.447332
Target:  5'- cCGCCGCGGccGCcGCcGC-CUCCUCCa -3'
miRNA:   3'- -GCGGCGCCauCGaCGcCGcGGGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 96781 0.7 0.455717
Target:  5'- uCGCCGcCGGcAGCaGCGGCGgCgCUCg -3'
miRNA:   3'- -GCGGC-GCCaUCGaCGCCGCgGgGAGg -5'
13938 5' -64.4 NC_003521.1 + 114312 0.69 0.464186
Target:  5'- aCGCCGCGGaccugGGCuucUGCcgccuGGCGCUCUUCg -3'
miRNA:   3'- -GCGGCGCCa----UCG---ACG-----CCGCGGGGAGg -5'
13938 5' -64.4 NC_003521.1 + 162215 0.69 0.464186
Target:  5'- aGCCGCGc-AGU--CGGUGCCUCUCCg -3'
miRNA:   3'- gCGGCGCcaUCGacGCCGCGGGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 192723 0.69 0.464186
Target:  5'- cCGCgauaGCGGUGGUuuuuucuuuuucUGCGGCGUCCgCgggCCg -3'
miRNA:   3'- -GCGg---CGCCAUCG------------ACGCCGCGGG-Ga--GG- -5'
13938 5' -64.4 NC_003521.1 + 98961 0.69 0.472737
Target:  5'- gGUgGCGGcUAGCgacgGCGGCGCCUUUa- -3'
miRNA:   3'- gCGgCGCC-AUCGa---CGCCGCGGGGAgg -5'
13938 5' -64.4 NC_003521.1 + 80979 0.69 0.472737
Target:  5'- gGgCGCGaGUAGCaGCGGCcCUUCUCCu -3'
miRNA:   3'- gCgGCGC-CAUCGaCGCCGcGGGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 141298 0.69 0.472737
Target:  5'- aGgUGCaGGU-GCggGCGGCGCCCCggagCCc -3'
miRNA:   3'- gCgGCG-CCAuCGa-CGCCGCGGGGa---GG- -5'
13938 5' -64.4 NC_003521.1 + 204369 0.69 0.467597
Target:  5'- uCGUCGCGGcccAGgaGCGaGCGCaacucgucuccgcggCCCUCCg -3'
miRNA:   3'- -GCGGCGCCa--UCgaCGC-CGCG---------------GGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 36061 0.69 0.464186
Target:  5'- cCGCCGCcgacacaacagGGcGGCgGCGGCGCCUCcaucaCCa -3'
miRNA:   3'- -GCGGCG-----------CCaUCGaCGCCGCGGGGa----GG- -5'
13938 5' -64.4 NC_003521.1 + 164426 0.69 0.464186
Target:  5'- cCGCCGCuGGU-GCUaGCaGCGCCaCCgcggCCg -3'
miRNA:   3'- -GCGGCG-CCAuCGA-CGcCGCGG-GGa---GG- -5'
13938 5' -64.4 NC_003521.1 + 160757 0.75 0.225854
Target:  5'- cCGCCGCGGUcuGCUGUGuccgucuccuCGCCUCUCCu -3'
miRNA:   3'- -GCGGCGCCAu-CGACGCc---------GCGGGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 130317 0.75 0.21547
Target:  5'- gGCCGCGG-AGacgUGCGuggccacGUGCCCCUCCa -3'
miRNA:   3'- gCGGCGCCaUCg--ACGC-------CGCGGGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 224082 0.77 0.164103
Target:  5'- gCGcCCGCGGUGGCgGCGGCGCaggCCCgUCg -3'
miRNA:   3'- -GC-GGCGCCAUCGaCGCCGCG---GGG-AGg -5'
13938 5' -64.4 NC_003521.1 + 164546 0.77 0.164103
Target:  5'- uGCUGCGGUGGCUguccaggaGCGGCgguccGCgCCUCCg -3'
miRNA:   3'- gCGGCGCCAUCGA--------CGCCG-----CGgGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 62107 0.79 0.115168
Target:  5'- gCGCCGCGGUucc-GCGGCGCCCUcCCa -3'
miRNA:   3'- -GCGGCGCCAucgaCGCCGCGGGGaGG- -5'
13938 5' -64.4 NC_003521.1 + 149182 0.8 0.102134
Target:  5'- gCGCUGCGGUGcucgaugccGCgGCGGCGCUCCUCg -3'
miRNA:   3'- -GCGGCGCCAU---------CGaCGCCGCGGGGAGg -5'
13938 5' -64.4 NC_003521.1 + 54431 0.86 0.03817
Target:  5'- gCGCgGCGGUGGCggagGCGGCgGCCUCUCCa -3'
miRNA:   3'- -GCGgCGCCAUCGa---CGCCG-CGGGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 135619 0.65 0.691514
Target:  5'- cCGCCGCGGagacGGCgcgcGCGGgagggaggcaaccCGCCCgaCCc -3'
miRNA:   3'- -GCGGCGCCa---UCGa---CGCC-------------GCGGGgaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.