miRNA display CGI


Results 41 - 60 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13938 5' -64.4 NC_003521.1 + 164703 0.7 0.430823
Target:  5'- gGCCGCGGccGCgGUGGCGCUgCUagcaCCa -3'
miRNA:   3'- gCGGCGCCauCGaCGCCGCGGgGA----GG- -5'
13938 5' -64.4 NC_003521.1 + 137743 0.73 0.299814
Target:  5'- gCGCCGCGacacGC--CGGCGCCCUUCCa -3'
miRNA:   3'- -GCGGCGCcau-CGacGCCGCGGGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 149182 0.8 0.102134
Target:  5'- gCGCUGCGGUGcucgaugccGCgGCGGCGCUCCUCg -3'
miRNA:   3'- -GCGGCGCCAU---------CGaCGCCGCGGGGAGg -5'
13938 5' -64.4 NC_003521.1 + 49834 0.7 0.414676
Target:  5'- gCGCCGCGGcccacgcGGCagGUGGUGCUCUUCa -3'
miRNA:   3'- -GCGGCGCCa------UCGa-CGCCGCGGGGAGg -5'
13938 5' -64.4 NC_003521.1 + 54431 0.86 0.03817
Target:  5'- gCGCgGCGGUGGCggagGCGGCgGCCUCUCCa -3'
miRNA:   3'- -GCGgCGCCAUCGa---CGCCG-CGGGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 173055 0.69 0.49885
Target:  5'- cCGCCacggGCGGcgUGGUccGCGGCGCCCC-Cg -3'
miRNA:   3'- -GCGG----CGCC--AUCGa-CGCCGCGGGGaGg -5'
13938 5' -64.4 NC_003521.1 + 164546 0.77 0.164103
Target:  5'- uGCUGCGGUGGCUguccaggaGCGGCgguccGCgCCUCCg -3'
miRNA:   3'- gCGGCGCCAUCGA--------CGCCG-----CGgGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 164007 0.69 0.490072
Target:  5'- gCGCCGCuGUuGCcGcCGGCGCCgCUCa -3'
miRNA:   3'- -GCGGCGcCAuCGaC-GCCGCGGgGAGg -5'
13938 5' -64.4 NC_003521.1 + 233341 0.69 0.490072
Target:  5'- aGCgGCGGaGGCgGCGGCaGUCCCagCa -3'
miRNA:   3'- gCGgCGCCaUCGaCGCCG-CGGGGagG- -5'
13938 5' -64.4 NC_003521.1 + 85844 0.69 0.47618
Target:  5'- cCGUgGUGGUGGUggggggcggcggcgGCGGCGCCUCaggCCc -3'
miRNA:   3'- -GCGgCGCCAUCGa-------------CGCCGCGGGGa--GG- -5'
13938 5' -64.4 NC_003521.1 + 204649 0.69 0.472737
Target:  5'- gGCCGCGGagacgAGUUGCGcuCGCUCCUgggCCg -3'
miRNA:   3'- gCGGCGCCa----UCGACGCc-GCGGGGA---GG- -5'
13938 5' -64.4 NC_003521.1 + 200854 0.7 0.447332
Target:  5'- gGCaGCGGUcGCa--GGCGCCgCCUCCg -3'
miRNA:   3'- gCGgCGCCAuCGacgCCGCGG-GGAGG- -5'
13938 5' -64.4 NC_003521.1 + 74435 0.7 0.439033
Target:  5'- gCGCCGCGGcgcAGCggccaGCGGCaccuggGCCCCguggcgcgCCa -3'
miRNA:   3'- -GCGGCGCCa--UCGa----CGCCG------CGGGGa-------GG- -5'
13938 5' -64.4 NC_003521.1 + 108652 0.71 0.398906
Target:  5'- gGUCG-GGuUAGCgUGCGGCGCCUgUCUg -3'
miRNA:   3'- gCGGCgCC-AUCG-ACGCCGCGGGgAGG- -5'
13938 5' -64.4 NC_003521.1 + 56724 0.71 0.368545
Target:  5'- gGCCGUGGc----GCGGCGCCUCUCg -3'
miRNA:   3'- gCGGCGCCaucgaCGCCGCGGGGAGg -5'
13938 5' -64.4 NC_003521.1 + 105340 0.72 0.346836
Target:  5'- uGCgGUGGUGGCgGCGGUgggaucGCCCCUg- -3'
miRNA:   3'- gCGgCGCCAUCGaCGCCG------CGGGGAgg -5'
13938 5' -64.4 NC_003521.1 + 113125 0.72 0.319341
Target:  5'- aGCCGCGGgagcAGCUGgGGCaGCUCggCCa -3'
miRNA:   3'- gCGGCGCCa---UCGACgCCG-CGGGgaGG- -5'
13938 5' -64.4 NC_003521.1 + 158245 0.73 0.287317
Target:  5'- uCGCCGCGG--GCgGCGGCGUCgCUaCCa -3'
miRNA:   3'- -GCGGCGCCauCGaCGCCGCGGgGA-GG- -5'
13938 5' -64.4 NC_003521.1 + 222185 0.74 0.26356
Target:  5'- gCGCCGCGGcAGCcccgaaggGUGGCGCCgCgcgCCg -3'
miRNA:   3'- -GCGGCGCCaUCGa-------CGCCGCGGgGa--GG- -5'
13938 5' -64.4 NC_003521.1 + 160757 0.75 0.225854
Target:  5'- cCGCCGCGGUcuGCUGUGuccgucuccuCGCCUCUCCu -3'
miRNA:   3'- -GCGGCGCCAu-CGACGCc---------GCGGGGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.