miRNA display CGI


Results 101 - 120 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13938 5' -64.4 NC_003521.1 + 162891 0.67 0.608458
Target:  5'- gGCgUGCGG-AGCgggcGCGGCGCUCgUCg -3'
miRNA:   3'- gCG-GCGCCaUCGa---CGCCGCGGGgAGg -5'
13938 5' -64.4 NC_003521.1 + 138317 0.67 0.617809
Target:  5'- cCGCgGCGGUcGCggGCGacccaCGCCCCgugcgCCg -3'
miRNA:   3'- -GCGgCGCCAuCGa-CGCc----GCGGGGa----GG- -5'
13938 5' -64.4 NC_003521.1 + 128132 0.67 0.618745
Target:  5'- aCGCCGCgcauccugguGGgcaaccugcccgacgGGCUGgcgcCGGgGCCCUUCCa -3'
miRNA:   3'- -GCGGCG----------CCa--------------UCGAC----GCCgCGGGGAGG- -5'
13938 5' -64.4 NC_003521.1 + 24176 0.66 0.636535
Target:  5'- gGgCGCGGUGGCagcggagGCGGuCGaCCCCa-- -3'
miRNA:   3'- gCgGCGCCAUCGa------CGCC-GC-GGGGagg -5'
13938 5' -64.4 NC_003521.1 + 87059 0.66 0.645896
Target:  5'- gGUCGCGGUAcguacGCgGUGGUGCCCa--- -3'
miRNA:   3'- gCGGCGCCAU-----CGaCGCCGCGGGgagg -5'
13938 5' -64.4 NC_003521.1 + 166788 0.68 0.51393
Target:  5'- aGCUGCGGgcccuacugacGCUcaucaacucggacGCGGCGCCCCgCUg -3'
miRNA:   3'- gCGGCGCCau---------CGA-------------CGCCGCGGGGaGG- -5'
13938 5' -64.4 NC_003521.1 + 221237 0.69 0.49885
Target:  5'- cCGCgaCGUGG-AGCUGCaGCGCuCCCUgCu -3'
miRNA:   3'- -GCG--GCGCCaUCGACGcCGCG-GGGAgG- -5'
13938 5' -64.4 NC_003521.1 + 224082 0.77 0.164103
Target:  5'- gCGcCCGCGGUGGCgGCGGCGCaggCCCgUCg -3'
miRNA:   3'- -GC-GGCGCCAUCGaCGCCGCG---GGG-AGg -5'
13938 5' -64.4 NC_003521.1 + 226897 0.74 0.236136
Target:  5'- gGCCGCgagcaagcuGGUGuGCUGCGGCgaGCCCCUgacgCCg -3'
miRNA:   3'- gCGGCG---------CCAU-CGACGCCG--CGGGGA----GG- -5'
13938 5' -64.4 NC_003521.1 + 56252 0.74 0.269346
Target:  5'- aCGCCGUGGaccGGCUGCGGC-CCCUgcaCa -3'
miRNA:   3'- -GCGGCGCCa--UCGACGCCGcGGGGag-G- -5'
13938 5' -64.4 NC_003521.1 + 74849 0.73 0.293514
Target:  5'- gGCCGCGGgacGCcGCGcCGCCgCUCCg -3'
miRNA:   3'- gCGGCGCCau-CGaCGCcGCGGgGAGG- -5'
13938 5' -64.4 NC_003521.1 + 217098 0.72 0.346129
Target:  5'- cCGCCGCGG--GCUGCGaccuccuGCGCgCCaUCCg -3'
miRNA:   3'- -GCGGCGCCauCGACGC-------CGCGgGG-AGG- -5'
13938 5' -64.4 NC_003521.1 + 43440 0.72 0.353252
Target:  5'- gGUCGCGGUGGCgcucgUGCGGCagcagcGCCaccagcgcgugcaCCUCCa -3'
miRNA:   3'- gCGGCGCCAUCG-----ACGCCG------CGG-------------GGAGG- -5'
13938 5' -64.4 NC_003521.1 + 210001 0.71 0.375985
Target:  5'- gGCUGCcGUGGCUGCcgcuGCGCacgaCCUCCu -3'
miRNA:   3'- gCGGCGcCAUCGACGc---CGCGg---GGAGG- -5'
13938 5' -64.4 NC_003521.1 + 102701 0.71 0.398906
Target:  5'- uGCCGCGGc--CUGCGGCGCgUCUg- -3'
miRNA:   3'- gCGGCGCCaucGACGCCGCGgGGAgg -5'
13938 5' -64.4 NC_003521.1 + 180854 0.7 0.447332
Target:  5'- aGCUGCGGUcucgaGGCUGaCGGCGCUauaagauacaUCUCg -3'
miRNA:   3'- gCGGCGCCA-----UCGAC-GCCGCGG----------GGAGg -5'
13938 5' -64.4 NC_003521.1 + 36550 0.7 0.455717
Target:  5'- uGUCGCGGUccgAGgUGCGcaGCGCCUCgaUCCa -3'
miRNA:   3'- gCGGCGCCA---UCgACGC--CGCGGGG--AGG- -5'
13938 5' -64.4 NC_003521.1 + 227160 0.69 0.472737
Target:  5'- gGCCGCGcUGGCcgccGUGGUGCCCC-Cg -3'
miRNA:   3'- gCGGCGCcAUCGa---CGCCGCGGGGaGg -5'
13938 5' -64.4 NC_003521.1 + 117522 0.69 0.481367
Target:  5'- aCGaCgGCGGUGGCgggauggcgGCGGCGCCgggagCCgCCg -3'
miRNA:   3'- -GC-GgCGCCAUCGa--------CGCCGCGG-----GGaGG- -5'
13938 5' -64.4 NC_003521.1 + 125378 0.69 0.490072
Target:  5'- aGCUGaCGGcGGCcGUGGUGCCCaUCCc -3'
miRNA:   3'- gCGGC-GCCaUCGaCGCCGCGGGgAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.