miRNA display CGI


Results 121 - 140 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13938 5' -64.4 NC_003521.1 + 101301 0.67 0.617809
Target:  5'- gGCCGCcauGG-AGCUGCacgGGCGUgCCCgCCa -3'
miRNA:   3'- gCGGCG---CCaUCGACG---CCGCG-GGGaGG- -5'
13938 5' -64.4 NC_003521.1 + 49374 0.67 0.59912
Target:  5'- gCGCCGCGGUcaccacGCgcacuuUGUGGauauCGCCCC-CCg -3'
miRNA:   3'- -GCGGCGCCAu-----CG------ACGCC----GCGGGGaGG- -5'
13938 5' -64.4 NC_003521.1 + 143960 0.7 0.447332
Target:  5'- gCGCgGCGGUAGCUGuCGacgcaCGCCagCUUCCa -3'
miRNA:   3'- -GCGgCGCCAUCGAC-GCc----GCGG--GGAGG- -5'
13938 5' -64.4 NC_003521.1 + 82923 0.69 0.461637
Target:  5'- uGCC-UGGUAgucugcguuagcuuGCUGCGGaCGCCcuCCUCCg -3'
miRNA:   3'- gCGGcGCCAU--------------CGACGCC-GCGG--GGAGG- -5'
13938 5' -64.4 NC_003521.1 + 123880 0.69 0.472737
Target:  5'- aCGCCGCu---GCUacgGCGGCuGCCCCUgCg -3'
miRNA:   3'- -GCGGCGccauCGA---CGCCG-CGGGGAgG- -5'
13938 5' -64.4 NC_003521.1 + 233341 0.69 0.490072
Target:  5'- aGCgGCGGaGGCgGCGGCaGUCCCagCa -3'
miRNA:   3'- gCGgCGCCaUCGaCGCCG-CGGGGagG- -5'
13938 5' -64.4 NC_003521.1 + 164007 0.69 0.490072
Target:  5'- gCGCCGCuGUuGCcGcCGGCGCCgCUCa -3'
miRNA:   3'- -GCGGCGcCAuCGaC-GCCGCGGgGAGg -5'
13938 5' -64.4 NC_003521.1 + 45958 0.69 0.49885
Target:  5'- uCGCCGCGGUAcgguguccGCU-CGGUGUCCggCCc -3'
miRNA:   3'- -GCGGCGCCAU--------CGAcGCCGCGGGgaGG- -5'
13938 5' -64.4 NC_003521.1 + 65389 0.68 0.51661
Target:  5'- gCGCCaucuguCGGUacucguccAGCUGuCGGCGCCgCUCUu -3'
miRNA:   3'- -GCGGc-----GCCA--------UCGAC-GCCGCGGgGAGG- -5'
13938 5' -64.4 NC_003521.1 + 32147 0.68 0.525586
Target:  5'- uGCCGCGGccUGGCggUGCGGUaCCgCUCg -3'
miRNA:   3'- gCGGCGCC--AUCG--ACGCCGcGGgGAGg -5'
13938 5' -64.4 NC_003521.1 + 28240 0.68 0.552845
Target:  5'- uGCCGCcGUGGCcGUGaGCGCCgCCUg- -3'
miRNA:   3'- gCGGCGcCAUCGaCGC-CGCGG-GGAgg -5'
13938 5' -64.4 NC_003521.1 + 163372 0.68 0.562028
Target:  5'- gGCgGCGGUGGUcGUGGCGCuggcgCCCgaggacgggCCg -3'
miRNA:   3'- gCGgCGCCAUCGaCGCCGCG-----GGGa--------GG- -5'
13938 5' -64.4 NC_003521.1 + 202377 0.67 0.596323
Target:  5'- cCGUCcCGGUaccugcgccAGCUGCGGUauuagaggcgccggGCCCCgUCCc -3'
miRNA:   3'- -GCGGcGCCA---------UCGACGCCG--------------CGGGG-AGG- -5'
13938 5' -64.4 NC_003521.1 + 123088 0.67 0.589803
Target:  5'- aCGaCGaCGGUAGCgGCGGCGUgUCgcugCCg -3'
miRNA:   3'- -GCgGC-GCCAUCGaCGCCGCGgGGa---GG- -5'
13938 5' -64.4 NC_003521.1 + 222870 0.71 0.38657
Target:  5'- gGCCGCGGaguuccgcgAGCUGCGcguuuucauccgccaGCGCCUCUgCu -3'
miRNA:   3'- gCGGCGCCa--------UCGACGC---------------CGCGGGGAgG- -5'
13938 5' -64.4 NC_003521.1 + 224816 0.67 0.588873
Target:  5'- uGCCGCuGGUuccuGCUG-GGCGCCgugggugCCUaCCg -3'
miRNA:   3'- gCGGCG-CCAu---CGACgCCGCGG-------GGA-GG- -5'
13938 5' -64.4 NC_003521.1 + 4598 0.68 0.571252
Target:  5'- gGCgGCGGUGGCgccaggcaugGaCGGUcgaGCCCCcgCCg -3'
miRNA:   3'- gCGgCGCCAUCGa---------C-GCCG---CGGGGa-GG- -5'
13938 5' -64.4 NC_003521.1 + 225850 0.66 0.683187
Target:  5'- gCGCuCGUGGUGGUgcggGCacaGGUGCCggugCUCCa -3'
miRNA:   3'- -GCG-GCGCCAUCGa---CG---CCGCGGg---GAGG- -5'
13938 5' -64.4 NC_003521.1 + 202325 0.68 0.525586
Target:  5'- uGCUGCuGGaacuGCUGcCGGUGCUaCCUCCu -3'
miRNA:   3'- gCGGCG-CCau--CGAC-GCCGCGG-GGAGG- -5'
13938 5' -64.4 NC_003521.1 + 112000 0.66 0.680404
Target:  5'- uCGCCGUcuacgagccccaccGGgaaaacguuCUGCGGUGCCCCgaCCg -3'
miRNA:   3'- -GCGGCG--------------CCauc------GACGCCGCGGGGa-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.