miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13939 3' -50.9 NC_003521.1 + 186540 0.66 0.998818
Target:  5'- gGGcUCCGUGGGAGGCagggCCGGcACg- -3'
miRNA:   3'- aUC-AGGCACUUUUCGaa--GGCCaUGgg -5'
13939 3' -50.9 NC_003521.1 + 85452 0.68 0.992333
Target:  5'- -cGUCCGcgccggcgaGAAAGGUggucgucguggugCCGGUGCCCg -3'
miRNA:   3'- auCAGGCa--------CUUUUCGaa-----------GGCCAUGGG- -5'
13939 3' -50.9 NC_003521.1 + 147594 0.68 0.992941
Target:  5'- gAGUCCGaaGAAGGUgcCCagguGGUACCCg -3'
miRNA:   3'- aUCAGGCacUUUUCGaaGG----CCAUGGG- -5'
13939 3' -50.9 NC_003521.1 + 154282 0.67 0.995426
Target:  5'- cAGUCgCGUGGAGcggggcggcacGGCgUCCGGgGCCg -3'
miRNA:   3'- aUCAG-GCACUUU-----------UCGaAGGCCaUGGg -5'
13939 3' -50.9 NC_003521.1 + 209963 0.67 0.997148
Target:  5'- gGGUUCG-GAGAAGUUgCCGcGgacgGCCCa -3'
miRNA:   3'- aUCAGGCaCUUUUCGAaGGC-Ca---UGGG- -5'
13939 3' -50.9 NC_003521.1 + 89478 0.66 0.997585
Target:  5'- cGGUCCGcagagcggGAAGAGCaggaCGGU-CCCa -3'
miRNA:   3'- aUCAGGCa-------CUUUUCGaag-GCCAuGGG- -5'
13939 3' -50.9 NC_003521.1 + 188995 0.66 0.997585
Target:  5'- --cUCUGUGAcGAGUUacUCgaGGUACCCg -3'
miRNA:   3'- aucAGGCACUuUUCGA--AGg-CCAUGGG- -5'
13939 3' -50.9 NC_003521.1 + 111785 0.66 0.998576
Target:  5'- ---cUCGUGGAcuuuGAGUUUCUgcgGGUGCCCu -3'
miRNA:   3'- aucaGGCACUU----UUCGAAGG---CCAUGGG- -5'
13939 3' -50.9 NC_003521.1 + 190550 0.66 0.998576
Target:  5'- -uGUCCGUGAAgcGCcgCUcGUACUCg -3'
miRNA:   3'- auCAGGCACUUuuCGaaGGcCAUGGG- -5'
13939 3' -50.9 NC_003521.1 + 124945 0.68 0.990004
Target:  5'- cAGUCCGUGGGugggcacgugcagcAGgaUCUGGUugCCc -3'
miRNA:   3'- aUCAGGCACUUu-------------UCgaAGGCCAugGG- -5'
13939 3' -50.9 NC_003521.1 + 236437 0.68 0.989478
Target:  5'- gGGUCUGcaccuGGAGCUUCUGGaACCUg -3'
miRNA:   3'- aUCAGGCacu--UUUCGAAGGCCaUGGG- -5'
13939 3' -50.9 NC_003521.1 + 105798 0.68 0.989478
Target:  5'- ---aCCGUGAcgcAGGCca-CGGUGCCCg -3'
miRNA:   3'- aucaGGCACUu--UUCGaagGCCAUGGG- -5'
13939 3' -50.9 NC_003521.1 + 71986 0.72 0.945508
Target:  5'- -cGUCCGUGAcgcgcAGCUcgCUGGgGCCCa -3'
miRNA:   3'- auCAGGCACUuu---UCGAa-GGCCaUGGG- -5'
13939 3' -50.9 NC_003521.1 + 85406 0.72 0.945508
Target:  5'- uUGG-CCGgcagcAGGCcUCCGGUGCCCa -3'
miRNA:   3'- -AUCaGGCacuu-UUCGaAGGCCAUGGG- -5'
13939 3' -50.9 NC_003521.1 + 162305 0.71 0.953916
Target:  5'- gAGUCCGcGGAAuccGCgucgcgugUCCGGUcgGCCCg -3'
miRNA:   3'- aUCAGGCaCUUUu--CGa-------AGGCCA--UGGG- -5'
13939 3' -50.9 NC_003521.1 + 182261 0.7 0.968
Target:  5'- cUAG-CCGUGAuuGGCUUgaGGUACUg -3'
miRNA:   3'- -AUCaGGCACUuuUCGAAggCCAUGGg -5'
13939 3' -50.9 NC_003521.1 + 110532 0.69 0.981755
Target:  5'- aGGUCUGcUGGAAGGCgggccgaugcaccugUUCCGGgugAUCCa -3'
miRNA:   3'- aUCAGGC-ACUUUUCG---------------AAGGCCa--UGGG- -5'
13939 3' -50.9 NC_003521.1 + 81286 0.69 0.984813
Target:  5'- -cGUCCGUGcuguuguaaGAGAGCUgaCUGGUGCUg -3'
miRNA:   3'- auCAGGCAC---------UUUUCGAa-GGCCAUGGg -5'
13939 3' -50.9 NC_003521.1 + 134855 0.68 0.989343
Target:  5'- cUGGUCCGUGAuGAGCacguugUUCUgcgcgaucuuguuGGUGCCg -3'
miRNA:   3'- -AUCAGGCACUuUUCG------AAGG-------------CCAUGGg -5'
13939 3' -50.9 NC_003521.1 + 180165 0.68 0.989343
Target:  5'- -cGUCCGUGAagccguaGAGGCgUCCGG-GCUUg -3'
miRNA:   3'- auCAGGCACU-------UUUCGaAGGCCaUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.