Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13939 | 3' | -50.9 | NC_003521.1 | + | 186540 | 0.66 | 0.998818 |
Target: 5'- gGGcUCCGUGGGAGGCagggCCGGcACg- -3' miRNA: 3'- aUC-AGGCACUUUUCGaa--GGCCaUGgg -5' |
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13939 | 3' | -50.9 | NC_003521.1 | + | 85452 | 0.68 | 0.992333 |
Target: 5'- -cGUCCGcgccggcgaGAAAGGUggucgucguggugCCGGUGCCCg -3' miRNA: 3'- auCAGGCa--------CUUUUCGaa-----------GGCCAUGGG- -5' |
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13939 | 3' | -50.9 | NC_003521.1 | + | 147594 | 0.68 | 0.992941 |
Target: 5'- gAGUCCGaaGAAGGUgcCCagguGGUACCCg -3' miRNA: 3'- aUCAGGCacUUUUCGaaGG----CCAUGGG- -5' |
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13939 | 3' | -50.9 | NC_003521.1 | + | 154282 | 0.67 | 0.995426 |
Target: 5'- cAGUCgCGUGGAGcggggcggcacGGCgUCCGGgGCCg -3' miRNA: 3'- aUCAG-GCACUUU-----------UCGaAGGCCaUGGg -5' |
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13939 | 3' | -50.9 | NC_003521.1 | + | 209963 | 0.67 | 0.997148 |
Target: 5'- gGGUUCG-GAGAAGUUgCCGcGgacgGCCCa -3' miRNA: 3'- aUCAGGCaCUUUUCGAaGGC-Ca---UGGG- -5' |
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13939 | 3' | -50.9 | NC_003521.1 | + | 89478 | 0.66 | 0.997585 |
Target: 5'- cGGUCCGcagagcggGAAGAGCaggaCGGU-CCCa -3' miRNA: 3'- aUCAGGCa-------CUUUUCGaag-GCCAuGGG- -5' |
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13939 | 3' | -50.9 | NC_003521.1 | + | 188995 | 0.66 | 0.997585 |
Target: 5'- --cUCUGUGAcGAGUUacUCgaGGUACCCg -3' miRNA: 3'- aucAGGCACUuUUCGA--AGg-CCAUGGG- -5' |
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13939 | 3' | -50.9 | NC_003521.1 | + | 111785 | 0.66 | 0.998576 |
Target: 5'- ---cUCGUGGAcuuuGAGUUUCUgcgGGUGCCCu -3' miRNA: 3'- aucaGGCACUU----UUCGAAGG---CCAUGGG- -5' |
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13939 | 3' | -50.9 | NC_003521.1 | + | 190550 | 0.66 | 0.998576 |
Target: 5'- -uGUCCGUGAAgcGCcgCUcGUACUCg -3' miRNA: 3'- auCAGGCACUUuuCGaaGGcCAUGGG- -5' |
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13939 | 3' | -50.9 | NC_003521.1 | + | 124945 | 0.68 | 0.990004 |
Target: 5'- cAGUCCGUGGGugggcacgugcagcAGgaUCUGGUugCCc -3' miRNA: 3'- aUCAGGCACUUu-------------UCgaAGGCCAugGG- -5' |
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13939 | 3' | -50.9 | NC_003521.1 | + | 236437 | 0.68 | 0.989478 |
Target: 5'- gGGUCUGcaccuGGAGCUUCUGGaACCUg -3' miRNA: 3'- aUCAGGCacu--UUUCGAAGGCCaUGGG- -5' |
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13939 | 3' | -50.9 | NC_003521.1 | + | 105798 | 0.68 | 0.989478 |
Target: 5'- ---aCCGUGAcgcAGGCca-CGGUGCCCg -3' miRNA: 3'- aucaGGCACUu--UUCGaagGCCAUGGG- -5' |
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13939 | 3' | -50.9 | NC_003521.1 | + | 71986 | 0.72 | 0.945508 |
Target: 5'- -cGUCCGUGAcgcgcAGCUcgCUGGgGCCCa -3' miRNA: 3'- auCAGGCACUuu---UCGAa-GGCCaUGGG- -5' |
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13939 | 3' | -50.9 | NC_003521.1 | + | 85406 | 0.72 | 0.945508 |
Target: 5'- uUGG-CCGgcagcAGGCcUCCGGUGCCCa -3' miRNA: 3'- -AUCaGGCacuu-UUCGaAGGCCAUGGG- -5' |
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13939 | 3' | -50.9 | NC_003521.1 | + | 162305 | 0.71 | 0.953916 |
Target: 5'- gAGUCCGcGGAAuccGCgucgcgugUCCGGUcgGCCCg -3' miRNA: 3'- aUCAGGCaCUUUu--CGa-------AGGCCA--UGGG- -5' |
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13939 | 3' | -50.9 | NC_003521.1 | + | 182261 | 0.7 | 0.968 |
Target: 5'- cUAG-CCGUGAuuGGCUUgaGGUACUg -3' miRNA: 3'- -AUCaGGCACUuuUCGAAggCCAUGGg -5' |
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13939 | 3' | -50.9 | NC_003521.1 | + | 110532 | 0.69 | 0.981755 |
Target: 5'- aGGUCUGcUGGAAGGCgggccgaugcaccugUUCCGGgugAUCCa -3' miRNA: 3'- aUCAGGC-ACUUUUCG---------------AAGGCCa--UGGG- -5' |
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13939 | 3' | -50.9 | NC_003521.1 | + | 81286 | 0.69 | 0.984813 |
Target: 5'- -cGUCCGUGcuguuguaaGAGAGCUgaCUGGUGCUg -3' miRNA: 3'- auCAGGCAC---------UUUUCGAa-GGCCAUGGg -5' |
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13939 | 3' | -50.9 | NC_003521.1 | + | 134855 | 0.68 | 0.989343 |
Target: 5'- cUGGUCCGUGAuGAGCacguugUUCUgcgcgaucuuguuGGUGCCg -3' miRNA: 3'- -AUCAGGCACUuUUCG------AAGG-------------CCAUGGg -5' |
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13939 | 3' | -50.9 | NC_003521.1 | + | 180165 | 0.68 | 0.989343 |
Target: 5'- -cGUCCGUGAagccguaGAGGCgUCCGG-GCUUg -3' miRNA: 3'- auCAGGCACU-------UUUCGaAGGCCaUGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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