Results 21 - 34 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13939 | 3' | -50.9 | NC_003521.1 | + | 110532 | 0.69 | 0.981755 |
Target: 5'- aGGUCUGcUGGAAGGCgggccgaugcaccugUUCCGGgugAUCCa -3' miRNA: 3'- aUCAGGC-ACUUUUCG---------------AAGGCCa--UGGG- -5' |
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13939 | 3' | -50.9 | NC_003521.1 | + | 105798 | 0.68 | 0.989478 |
Target: 5'- ---aCCGUGAcgcAGGCca-CGGUGCCCg -3' miRNA: 3'- aucaGGCACUu--UUCGaagGCCAUGGG- -5' |
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13939 | 3' | -50.9 | NC_003521.1 | + | 100847 | 0.74 | 0.882152 |
Target: 5'- gGGUCgGUGAGAGGCUccggCCGGgacUGCuCCa -3' miRNA: 3'- aUCAGgCACUUUUCGAa---GGCC---AUG-GG- -5' |
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13939 | 3' | -50.9 | NC_003521.1 | + | 94623 | 0.66 | 0.999023 |
Target: 5'- uUGGUuucCCGUGAGAcgaugaugccAGCUcgaUCCGGgACCg -3' miRNA: 3'- -AUCA---GGCACUUU----------UCGA---AGGCCaUGGg -5' |
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13939 | 3' | -50.9 | NC_003521.1 | + | 89478 | 0.66 | 0.997585 |
Target: 5'- cGGUCCGcagagcggGAAGAGCaggaCGGU-CCCa -3' miRNA: 3'- aUCAGGCa-------CUUUUCGaag-GCCAuGGG- -5' |
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13939 | 3' | -50.9 | NC_003521.1 | + | 85452 | 0.68 | 0.992333 |
Target: 5'- -cGUCCGcgccggcgaGAAAGGUggucgucguggugCCGGUGCCCg -3' miRNA: 3'- auCAGGCa--------CUUUUCGaa-----------GGCCAUGGG- -5' |
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13939 | 3' | -50.9 | NC_003521.1 | + | 85406 | 0.72 | 0.945508 |
Target: 5'- uUGG-CCGgcagcAGGCcUCCGGUGCCCa -3' miRNA: 3'- -AUCaGGCacuu-UUCGaAGGCCAUGGG- -5' |
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13939 | 3' | -50.9 | NC_003521.1 | + | 81286 | 0.69 | 0.984813 |
Target: 5'- -cGUCCGUGcuguuguaaGAGAGCUgaCUGGUGCUg -3' miRNA: 3'- auCAGGCAC---------UUUUCGAa-GGCCAUGGg -5' |
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13939 | 3' | -50.9 | NC_003521.1 | + | 71986 | 0.72 | 0.945508 |
Target: 5'- -cGUCCGUGAcgcgcAGCUcgCUGGgGCCCa -3' miRNA: 3'- auCAGGCACUuu---UCGAa-GGCCaUGGG- -5' |
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13939 | 3' | -50.9 | NC_003521.1 | + | 50649 | 0.67 | 0.996075 |
Target: 5'- -cGUCgGUGGuguGGGCcugcuaaccUUCUGGUACCUg -3' miRNA: 3'- auCAGgCACUu--UUCG---------AAGGCCAUGGG- -5' |
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13939 | 3' | -50.9 | NC_003521.1 | + | 44473 | 0.68 | 0.992941 |
Target: 5'- cAGcCCGuUGAGGAuGCgcgUCCgcagGGUGCCCg -3' miRNA: 3'- aUCaGGC-ACUUUU-CGa--AGG----CCAUGGG- -5' |
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13939 | 3' | -50.9 | NC_003521.1 | + | 41043 | 0.69 | 0.982952 |
Target: 5'- gAGUCCG-GAGucgccGAGCUUCCGGcuUCUg -3' miRNA: 3'- aUCAGGCaCUU-----UUCGAAGGCCauGGG- -5' |
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13939 | 3' | -50.9 | NC_003521.1 | + | 29297 | 0.68 | 0.990754 |
Target: 5'- gUGGUCCGUGGAGAacuGCUcUCCGGa---- -3' miRNA: 3'- -AUCAGGCACUUUU---CGA-AGGCCauggg -5' |
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13939 | 3' | -50.9 | NC_003521.1 | + | 6799 | 1.12 | 0.009308 |
Target: 5'- gUAGUCCGUGAAAAGCUUCCGGUACCCg -3' miRNA: 3'- -AUCAGGCACUUUUCGAAGGCCAUGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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