miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1394 3' -54.9 NC_001335.1 + 37124 0.66 0.717536
Target:  5'- uGugGCGuUGGUGaCGGUcuucacaUCGGCaggaACGUCc -3'
miRNA:   3'- -UugCGCuACUAC-GCCA-------AGCCG----UGCAG- -5'
1394 3' -54.9 NC_001335.1 + 46328 0.66 0.690191
Target:  5'- cAACGCGgcGAUgaaccaccgcugGCGGgcugaugaaggcgUGGCACGUCg -3'
miRNA:   3'- -UUGCGCuaCUA------------CGCCaa-----------GCCGUGCAG- -5'
1394 3' -54.9 NC_001335.1 + 37844 0.67 0.663598
Target:  5'- -uCGgGAUGAUuCGGgcguUCGGCAgCGUCu -3'
miRNA:   3'- uuGCgCUACUAcGCCa---AGCCGU-GCAG- -5'
1394 3' -54.9 NC_001335.1 + 48376 0.68 0.585573
Target:  5'- cACGCcaagGGUGUGGUUCGGC-CGg- -3'
miRNA:   3'- uUGCGcua-CUACGCCAAGCCGuGCag -5'
1394 3' -54.9 NC_001335.1 + 17348 0.68 0.567896
Target:  5'- uGGCGCGGUGAUucagGUGGgugucuccaucggCGGCGCGcUCa -3'
miRNA:   3'- -UUGCGCUACUA----CGCCaa-----------GCCGUGC-AG- -5'
1394 3' -54.9 NC_001335.1 + 31046 0.69 0.488416
Target:  5'- cGCGCucGGUGAgcuucuUGCGGUUCGGC-CGg- -3'
miRNA:   3'- uUGCG--CUACU------ACGCCAAGCCGuGCag -5'
1394 3' -54.9 NC_001335.1 + 51978 0.69 0.488416
Target:  5'- uGugGUGGUGGUGUGGUgugcguguguUUGcGCugGUCa -3'
miRNA:   3'- -UugCGCUACUACGCCA----------AGC-CGugCAG- -5'
1394 3' -54.9 NC_001335.1 + 13499 0.72 0.372235
Target:  5'- gAACGCGAacaaGGUcGCGGccCGGUACGUCg -3'
miRNA:   3'- -UUGCGCUa---CUA-CGCCaaGCCGUGCAG- -5'
1394 3' -54.9 NC_001335.1 + 21262 0.73 0.321621
Target:  5'- -uUGUGGaaGUGCGGcuUUCGGCACGUCg -3'
miRNA:   3'- uuGCGCUacUACGCC--AAGCCGUGCAG- -5'
1394 3' -54.9 NC_001335.1 + 36565 1.08 0.001106
Target:  5'- cAACGCGAUGAUGCGGUUCGGCACGUCg -3'
miRNA:   3'- -UUGCGCUACUACGCCAAGCCGUGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.