miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1394 5' -59.9 NC_001335.1 + 1346 0.66 0.471678
Target:  5'- gGGGCuGCugCCACCGCCGccGGC-UCc -3'
miRNA:   3'- gCCUG-UGugGGUGGCGGUc-CCGuAGu -5'
1394 5' -59.9 NC_001335.1 + 9180 0.66 0.471678
Target:  5'- aGGAUGCGCgCCGCCGCgucGGuCAUCGa -3'
miRNA:   3'- gCCUGUGUG-GGUGGCGgucCC-GUAGU- -5'
1394 5' -59.9 NC_001335.1 + 9609 0.66 0.456073
Target:  5'- -cGACGCAgCCACgaagcuguacggcaaCgGCCAGGGUGUCAu -3'
miRNA:   3'- gcCUGUGUgGGUG---------------G-CGGUCCCGUAGU- -5'
1394 5' -59.9 NC_001335.1 + 32877 0.66 0.452215
Target:  5'- gCGGuccaGCACuCCACCGauGGGGUGUCGg -3'
miRNA:   3'- -GCCug--UGUG-GGUGGCggUCCCGUAGU- -5'
1394 5' -59.9 NC_001335.1 + 48476 0.67 0.414655
Target:  5'- ---cCGCACgCACCGCgAGGGCAa-- -3'
miRNA:   3'- gccuGUGUGgGUGGCGgUCCCGUagu -5'
1394 5' -59.9 NC_001335.1 + 22390 0.67 0.405568
Target:  5'- gGGugAUGCCCAgCGCCugcAGGaGCAUg- -3'
miRNA:   3'- gCCugUGUGGGUgGCGG---UCC-CGUAgu -5'
1394 5' -59.9 NC_001335.1 + 16901 0.67 0.405568
Target:  5'- uGGGCACAcagcucgcuCCCAUCGUCAcGGCGcUCAc -3'
miRNA:   3'- gCCUGUGU---------GGGUGGCGGUcCCGU-AGU- -5'
1394 5' -59.9 NC_001335.1 + 2592 0.67 0.396608
Target:  5'- aGcGAC-CACCCgaaCGCCAuccuGGGCGUCGa -3'
miRNA:   3'- gC-CUGuGUGGGug-GCGGU----CCCGUAGU- -5'
1394 5' -59.9 NC_001335.1 + 29249 0.67 0.387776
Target:  5'- aGGACGCGaagcUCCugCGCCuGGuaGUCGa -3'
miRNA:   3'- gCCUGUGU----GGGugGCGGuCCcgUAGU- -5'
1394 5' -59.9 NC_001335.1 + 29918 0.68 0.353766
Target:  5'- uGGACACGaucUUCACCGCgAGGGUcugCAa -3'
miRNA:   3'- gCCUGUGU---GGGUGGCGgUCCCGua-GU- -5'
1394 5' -59.9 NC_001335.1 + 38156 0.68 0.353766
Target:  5'- cCGGAuCGCAgCUACCguccagugacGCCAGGGCGa-- -3'
miRNA:   3'- -GCCU-GUGUgGGUGG----------CGGUCCCGUagu -5'
1394 5' -59.9 NC_001335.1 + 5572 0.68 0.329675
Target:  5'- aGGACgAUGCCCAgCaguGCCGGGGCggCGg -3'
miRNA:   3'- gCCUG-UGUGGGUgG---CGGUCCCGuaGU- -5'
1394 5' -59.9 NC_001335.1 + 22307 0.69 0.314298
Target:  5'- uGGACAUGCUC-CUGCaggcgcuGGGCAUCAc -3'
miRNA:   3'- gCCUGUGUGGGuGGCGgu-----CCCGUAGU- -5'
1394 5' -59.9 NC_001335.1 + 44408 0.69 0.312039
Target:  5'- gGGACGuaccugaACCCGCCGCCggccauaccuucguAGGGC-UCGa -3'
miRNA:   3'- gCCUGUg------UGGGUGGCGG--------------UCCCGuAGU- -5'
1394 5' -59.9 NC_001335.1 + 5940 0.69 0.283095
Target:  5'- uCGGGCugGCCUguGCCguggacggugaacaGCCAGGGCuugcUCAu -3'
miRNA:   3'- -GCCUGugUGGG--UGG--------------CGGUCCCGu---AGU- -5'
1394 5' -59.9 NC_001335.1 + 46427 0.7 0.24558
Target:  5'- uGcGCugGCUCugCGCCAGGcGCAUCc -3'
miRNA:   3'- gCcUGugUGGGugGCGGUCC-CGUAGu -5'
1394 5' -59.9 NC_001335.1 + 38682 0.71 0.205254
Target:  5'- aGGACGaaugaacgacuCGCCCAUCGCgAGGGCGa-- -3'
miRNA:   3'- gCCUGU-----------GUGGGUGGCGgUCCCGUagu -5'
1394 5' -59.9 NC_001335.1 + 12535 0.73 0.166312
Target:  5'- gGGGCACcuuCCaGCCGCCAGuGGCgAUCAa -3'
miRNA:   3'- gCCUGUGu--GGgUGGCGGUC-CCG-UAGU- -5'
1394 5' -59.9 NC_001335.1 + 4901 0.73 0.161938
Target:  5'- aGGccGCugGCCCGCC-UCGGGGCAUCc -3'
miRNA:   3'- gCC--UGugUGGGUGGcGGUCCCGUAGu -5'
1394 5' -59.9 NC_001335.1 + 6912 0.73 0.153501
Target:  5'- aGGGCcaguACAUCUACCGCgAGGGCGUg- -3'
miRNA:   3'- gCCUG----UGUGGGUGGCGgUCCCGUAgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.