miRNA display CGI


Results 41 - 60 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13940 3' -57.7 NC_003521.1 + 32888 0.72 0.674755
Target:  5'- gCgCCGCCGGUGC-UGCcgCCGUgcccgCCg -3'
miRNA:   3'- -GgGGCGGCCGCGuACGa-GGCAaua--GG- -5'
13940 3' -57.7 NC_003521.1 + 92458 0.72 0.636047
Target:  5'- aCCCCGCuCGGCuuGCccGCUCgGggGUCUc -3'
miRNA:   3'- -GGGGCG-GCCG--CGuaCGAGgCaaUAGG- -5'
13940 3' -57.7 NC_003521.1 + 64761 0.73 0.616648
Target:  5'- gCCgGCCGGCGCG-GCaCCGggcgAUCCc -3'
miRNA:   3'- gGGgCGGCCGCGUaCGaGGCaa--UAGG- -5'
13940 3' -57.7 NC_003521.1 + 62025 0.73 0.606961
Target:  5'- gCCCGCCGG-GCAUGCcUCGcccGUCCc -3'
miRNA:   3'- gGGGCGGCCgCGUACGaGGCaa-UAGG- -5'
13940 3' -57.7 NC_003521.1 + 67798 0.73 0.587644
Target:  5'- cCCaCCGgCGaGCGCGUGCUCCaaagcAUCCg -3'
miRNA:   3'- -GG-GGCgGC-CGCGUACGAGGcaa--UAGG- -5'
13940 3' -57.7 NC_003521.1 + 16847 0.7 0.773596
Target:  5'- uCCUCGCCGGCGCAgGCggacgucuacgaCGUgcguUCCc -3'
miRNA:   3'- -GGGGCGGCCGCGUaCGag----------GCAau--AGG- -5'
13940 3' -57.7 NC_003521.1 + 116161 0.7 0.777134
Target:  5'- aCuuGCCGGUGCGcaccugcugcUGCUCCuGUgg-CCg -3'
miRNA:   3'- gGggCGGCCGCGU----------ACGAGG-CAauaGG- -5'
13940 3' -57.7 NC_003521.1 + 111547 0.69 0.835615
Target:  5'- -aCCGCCGGCGCcucuaccucgagGUGCggcugagCCGgcggguUCCg -3'
miRNA:   3'- ggGGCGGCCGCG------------UACGa------GGCaau---AGG- -5'
13940 3' -57.7 NC_003521.1 + 233360 0.69 0.827705
Target:  5'- gCCUGCUGGaucCGCGgaUGCgucgCCGggAUCCg -3'
miRNA:   3'- gGGGCGGCC---GCGU--ACGa---GGCaaUAGG- -5'
13940 3' -57.7 NC_003521.1 + 69112 0.69 0.827705
Target:  5'- aCCaCGCCGGCGaCGUGa--CGUUGUUUg -3'
miRNA:   3'- gGG-GCGGCCGC-GUACgagGCAAUAGG- -5'
13940 3' -57.7 NC_003521.1 + 192129 0.69 0.827705
Target:  5'- gCCUCGUCGGCuccGUcgGCgUCCGcggAUCCa -3'
miRNA:   3'- -GGGGCGGCCG---CGuaCG-AGGCaa-UAGG- -5'
13940 3' -57.7 NC_003521.1 + 136821 0.69 0.819636
Target:  5'- aCCCCGgCGuGCGCAUGUacuacgCCGUcuUCa -3'
miRNA:   3'- -GGGGCgGC-CGCGUACGa-----GGCAauAGg -5'
13940 3' -57.7 NC_003521.1 + 98397 0.69 0.819636
Target:  5'- gCUUCGgCGGCGC-UGCUgCUGUuauUGUCCg -3'
miRNA:   3'- -GGGGCgGCCGCGuACGA-GGCA---AUAGG- -5'
13940 3' -57.7 NC_003521.1 + 39582 0.69 0.811413
Target:  5'- gUCCUGCCGGCGUcgGCg-----GUCCu -3'
miRNA:   3'- -GGGGCGGCCGCGuaCGaggcaaUAGG- -5'
13940 3' -57.7 NC_003521.1 + 224416 0.69 0.809751
Target:  5'- aCCUCGCCGGC-CAggcGCUgCGUggugggcgagcgGUCCa -3'
miRNA:   3'- -GGGGCGGCCGcGUa--CGAgGCAa-----------UAGG- -5'
13940 3' -57.7 NC_003521.1 + 17137 0.7 0.794537
Target:  5'- aUCCUGCCGGCGC--GCUUCGc---CCg -3'
miRNA:   3'- -GGGGCGGCCGCGuaCGAGGCaauaGG- -5'
13940 3' -57.7 NC_003521.1 + 114551 0.7 0.785898
Target:  5'- uUCCGCUGGCGCG-GUUgCGagAUCCc -3'
miRNA:   3'- gGGGCGGCCGCGUaCGAgGCaaUAGG- -5'
13940 3' -57.7 NC_003521.1 + 105594 0.7 0.785898
Target:  5'- gCCgCCGCCGGCGCAgccGCUCaGgcg-CUg -3'
miRNA:   3'- -GG-GGCGGCCGCGUa--CGAGgCaauaGG- -5'
13940 3' -57.7 NC_003521.1 + 99017 0.7 0.785898
Target:  5'- gUCuuGUagacgaUGGCGCcgGCUCCGggccgGUCCg -3'
miRNA:   3'- -GGggCG------GCCGCGuaCGAGGCaa---UAGG- -5'
13940 3' -57.7 NC_003521.1 + 165792 0.7 0.777134
Target:  5'- gCCCGCUGGCGC-UGCcgUCGcaguagggGUCCu -3'
miRNA:   3'- gGGGCGGCCGCGuACGa-GGCaa------UAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.