miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13940 5' -52.8 NC_003521.1 + 1554 0.66 0.993533
Target:  5'- cGAGaagagGAGAACGCggaGCGUGgaugcCCGCGGAa -3'
miRNA:   3'- -CUCaag--CUUUUGCG---UGCAC-----GGCGCCU- -5'
13940 5' -52.8 NC_003521.1 + 5668 0.68 0.978257
Target:  5'- uGGGgggUCGAGAcacggGCGCcCGU-CCGCGGGg -3'
miRNA:   3'- -CUCa--AGCUUU-----UGCGuGCAcGGCGCCU- -5'
13940 5' -52.8 NC_003521.1 + 10714 1.09 0.00946
Target:  5'- cGAGUUCGAAAACGCACGUGCCGCGGAc -3'
miRNA:   3'- -CUCAAGCUUUUGCGUGCACGGCGCCU- -5'
13940 5' -52.8 NC_003521.1 + 25543 0.67 0.989064
Target:  5'- gGAGagCGAcggcGGACGCuguugugcagGCG-GCCGCGGGg -3'
miRNA:   3'- -CUCaaGCU----UUUGCG----------UGCaCGGCGCCU- -5'
13940 5' -52.8 NC_003521.1 + 34501 0.67 0.982491
Target:  5'- aGAGcagCGA--GCGCAgGUagcgGCCGCGGGc -3'
miRNA:   3'- -CUCaa-GCUuuUGCGUgCA----CGGCGCCU- -5'
13940 5' -52.8 NC_003521.1 + 40765 0.8 0.501045
Target:  5'- gGAGUUCGAGAuGCGCugcggcgccgugGCGcGCCGCGGAc -3'
miRNA:   3'- -CUCAAGCUUU-UGCG------------UGCaCGGCGCCU- -5'
13940 5' -52.8 NC_003521.1 + 44467 0.66 0.995138
Target:  5'- ---gUUGAGGAUGCGCGU-CCGCaGGGu -3'
miRNA:   3'- cucaAGCUUUUGCGUGCAcGGCG-CCU- -5'
13940 5' -52.8 NC_003521.1 + 45230 0.66 0.992585
Target:  5'- aGGGUUCGggGAuCGCG-GUGUCGCc-- -3'
miRNA:   3'- -CUCAAGCuuUU-GCGUgCACGGCGccu -5'
13940 5' -52.8 NC_003521.1 + 56070 0.66 0.993533
Target:  5'- uGGUUCGA--GCGCACcaucuaUGCCgGCGGc -3'
miRNA:   3'- cUCAAGCUuuUGCGUGc-----ACGG-CGCCu -5'
13940 5' -52.8 NC_003521.1 + 56353 0.69 0.961064
Target:  5'- --cUUCGAuc-UGCGCGUGCUGCGcGAg -3'
miRNA:   3'- cucAAGCUuuuGCGUGCACGGCGC-CU- -5'
13940 5' -52.8 NC_003521.1 + 57461 0.66 0.994382
Target:  5'- cGAGUUUGcGAugacucccuGCGCcgcuuCGUGCUGCGGc -3'
miRNA:   3'- -CUCAAGCuUU---------UGCGu----GCACGGCGCCu -5'
13940 5' -52.8 NC_003521.1 + 62624 0.7 0.949645
Target:  5'- gGGGcgCGAGAGCGCGugcacCGUGCUGCcGAa -3'
miRNA:   3'- -CUCaaGCUUUUGCGU-----GCACGGCGcCU- -5'
13940 5' -52.8 NC_003521.1 + 65151 0.68 0.98046
Target:  5'- ----gCGGAccuCGCACGgGCCGUGGAg -3'
miRNA:   3'- cucaaGCUUuu-GCGUGCaCGGCGCCU- -5'
13940 5' -52.8 NC_003521.1 + 73218 0.68 0.97331
Target:  5'- ----aUGAGGAUGCGCGUGCCacaGGAg -3'
miRNA:   3'- cucaaGCUUUUGCGUGCACGGcg-CCU- -5'
13940 5' -52.8 NC_003521.1 + 74871 0.66 0.995138
Target:  5'- uGGcgCGGcggcgAGGCGCGcCG-GCCGCGGGa -3'
miRNA:   3'- cUCaaGCU-----UUUGCGU-GCaCGGCGCCU- -5'
13940 5' -52.8 NC_003521.1 + 76255 0.68 0.975876
Target:  5'- uGAGgcgCGAGAgGCGCACG-GCCGCc-- -3'
miRNA:   3'- -CUCaa-GCUUU-UGCGUGCaCGGCGccu -5'
13940 5' -52.8 NC_003521.1 + 76492 0.72 0.883308
Target:  5'- ---cUCGAGGACGUgcgcgcccaggGCGUGCCgGCGGGc -3'
miRNA:   3'- cucaAGCUUUUGCG-----------UGCACGG-CGCCU- -5'
13940 5' -52.8 NC_003521.1 + 76706 0.73 0.854026
Target:  5'- cGAGUUCGAGAAgGUcuuCGUGUCGCuGAu -3'
miRNA:   3'- -CUCAAGCUUUUgCGu--GCACGGCGcCU- -5'
13940 5' -52.8 NC_003521.1 + 79738 0.69 0.961064
Target:  5'- cAGUUC----AUGCAgauCGUGCCGCGGGg -3'
miRNA:   3'- cUCAAGcuuuUGCGU---GCACGGCGCCU- -5'
13940 5' -52.8 NC_003521.1 + 82752 0.7 0.94539
Target:  5'- cGGgaCGAGAucACGCGCGaccggcggGCCGUGGAg -3'
miRNA:   3'- cUCaaGCUUU--UGCGUGCa-------CGGCGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.