Results 21 - 40 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13941 | 3' | -52.7 | NC_003521.1 | + | 79590 | 0.68 | 0.981871 |
Target: 5'- aGAcccUgGUGGGUCgCGUGGUGGG-GCCc -3' miRNA: 3'- aCU---AgCAUUCGGgGCAUCACCUaCGG- -5' |
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13941 | 3' | -52.7 | NC_003521.1 | + | 129375 | 0.68 | 0.979783 |
Target: 5'- aGAagGUGccgaagauGGCCUCGaAGUGGAUGUUg -3' miRNA: 3'- aCUagCAU--------UCGGGGCaUCACCUACGG- -5' |
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13941 | 3' | -52.7 | NC_003521.1 | + | 166337 | 0.68 | 0.979783 |
Target: 5'- ---cCGcuauGGCCCUGcgggAGUGGAUGCUg -3' miRNA: 3'- acuaGCau--UCGGGGCa---UCACCUACGG- -5' |
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13941 | 3' | -52.7 | NC_003521.1 | + | 101584 | 0.68 | 0.976808 |
Target: 5'- cGcgCGagGAGCCCCGUacaGGUGGuagcucaggacgucgGCCa -3' miRNA: 3'- aCuaGCa-UUCGGGGCA---UCACCua-------------CGG- -5' |
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13941 | 3' | -52.7 | NC_003521.1 | + | 139379 | 0.68 | 0.975079 |
Target: 5'- aGAgcgcCGUGcucuuGGCCCCGcGGUGGucgAUGCUg -3' miRNA: 3'- aCUa---GCAU-----UCGGGGCaUCACC---UACGG- -5' |
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13941 | 3' | -52.7 | NC_003521.1 | + | 77681 | 0.68 | 0.972449 |
Target: 5'- cGGcCGU-GGCCCCGUcGUcGGcUGCCg -3' miRNA: 3'- aCUaGCAuUCGGGGCAuCA-CCuACGG- -5' |
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13941 | 3' | -52.7 | NC_003521.1 | + | 77870 | 0.68 | 0.972449 |
Target: 5'- cGAUggCGccGGCCUCGUAGUGGAaGUUg -3' miRNA: 3'- aCUA--GCauUCGGGGCAUCACCUaCGG- -5' |
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13941 | 3' | -52.7 | NC_003521.1 | + | 101468 | 0.69 | 0.969623 |
Target: 5'- ---aCGUGcGCCUCGUAGUGGcgcgugagGUGCUc -3' miRNA: 3'- acuaGCAUuCGGGGCAUCACC--------UACGG- -5' |
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13941 | 3' | -52.7 | NC_003521.1 | + | 45755 | 0.69 | 0.969623 |
Target: 5'- cGA-CGUGuagaaGGCUgCCGUGGUGGuggGCCg -3' miRNA: 3'- aCUaGCAU-----UCGG-GGCAUCACCua-CGG- -5' |
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13941 | 3' | -52.7 | NC_003521.1 | + | 222189 | 0.69 | 0.966597 |
Target: 5'- cGAggcgccgCGgcAGCCCCGaagGGUGGc-GCCg -3' miRNA: 3'- aCUa------GCauUCGGGGCa--UCACCuaCGG- -5' |
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13941 | 3' | -52.7 | NC_003521.1 | + | 106606 | 0.69 | 0.966597 |
Target: 5'- gGAcCGUGAGCaUCGUGGgacGAUGCCa -3' miRNA: 3'- aCUaGCAUUCGgGGCAUCac-CUACGG- -5' |
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13941 | 3' | -52.7 | NC_003521.1 | + | 61785 | 0.69 | 0.959919 |
Target: 5'- ---cCGccGGCUCCGgcGUGGAUGCg -3' miRNA: 3'- acuaGCauUCGGGGCauCACCUACGg -5' |
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13941 | 3' | -52.7 | NC_003521.1 | + | 2948 | 0.7 | 0.952374 |
Target: 5'- gGGUCGgcAGUCCaacguugcUGUAaUGGGUGCCa -3' miRNA: 3'- aCUAGCauUCGGG--------GCAUcACCUACGG- -5' |
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13941 | 3' | -52.7 | NC_003521.1 | + | 46873 | 0.7 | 0.934562 |
Target: 5'- -cGUCGUGGGUCCagaaGgcgaAGUGGGUGUCg -3' miRNA: 3'- acUAGCAUUCGGGg---Ca---UCACCUACGG- -5' |
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13941 | 3' | -52.7 | NC_003521.1 | + | 221111 | 0.7 | 0.934561 |
Target: 5'- gUGAUCGUGAcCUCCGUGGUG--UGCg -3' miRNA: 3'- -ACUAGCAUUcGGGGCAUCACcuACGg -5' |
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13941 | 3' | -52.7 | NC_003521.1 | + | 236858 | 0.71 | 0.92426 |
Target: 5'- -uGUCG-GAGCCCCGaGGcUGGcUGCCg -3' miRNA: 3'- acUAGCaUUCGGGGCaUC-ACCuACGG- -5' |
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13941 | 3' | -52.7 | NC_003521.1 | + | 89157 | 0.71 | 0.92426 |
Target: 5'- cUGcUCGUGGGCCUCacGGUGGAccacgauuuUGCCg -3' miRNA: 3'- -ACuAGCAUUCGGGGcaUCACCU---------ACGG- -5' |
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13941 | 3' | -52.7 | NC_003521.1 | + | 119907 | 0.71 | 0.918757 |
Target: 5'- ----gGUGGGCCUgGaacaGGUGGAUGCCg -3' miRNA: 3'- acuagCAUUCGGGgCa---UCACCUACGG- -5' |
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13941 | 3' | -52.7 | NC_003521.1 | + | 33953 | 0.71 | 0.900852 |
Target: 5'- cGGUUGUGAaaaCUCCGUAGaccccaggGGAUGCCg -3' miRNA: 3'- aCUAGCAUUc--GGGGCAUCa-------CCUACGG- -5' |
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13941 | 3' | -52.7 | NC_003521.1 | + | 56219 | 0.72 | 0.887771 |
Target: 5'- -cGUCGUAcuCCCCGaAGUGGcacgAUGCCa -3' miRNA: 3'- acUAGCAUucGGGGCaUCACC----UACGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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