miRNA display CGI


Results 1 - 20 of 272 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13941 5' -55.7 NC_003521.1 + 143544 0.66 0.957785
Target:  5'- -cGcCGCCgGCGACGagCAGCAgCCGCc -3'
miRNA:   3'- gaCuGUGGgUGCUGCa-GUCGU-GGUGa -5'
13941 5' -55.7 NC_003521.1 + 163087 0.66 0.961291
Target:  5'- -cGAgGCCgGCccguccucgGGCGcCAGCGCCACg -3'
miRNA:   3'- gaCUgUGGgUG---------CUGCaGUCGUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 201715 0.66 0.954068
Target:  5'- -aGACGCCCG-GACGaCuGCGCCAa- -3'
miRNA:   3'- gaCUGUGGGUgCUGCaGuCGUGGUga -5'
13941 5' -55.7 NC_003521.1 + 64977 0.66 0.954068
Target:  5'- gUGACcUCgCACGACGaCGuGCGCCGCUu -3'
miRNA:   3'- gACUGuGG-GUGCUGCaGU-CGUGGUGA- -5'
13941 5' -55.7 NC_003521.1 + 154053 0.66 0.961291
Target:  5'- -aGGCGCCCAUaaaGcCGUgCAGCAgCCGCa -3'
miRNA:   3'- gaCUGUGGGUG---CuGCA-GUCGU-GGUGa -5'
13941 5' -55.7 NC_003521.1 + 82890 0.66 0.957785
Target:  5'- -cGGCACCCGCuguuGGCG-CGuCGCCACUc -3'
miRNA:   3'- gaCUGUGGGUG----CUGCaGUcGUGGUGA- -5'
13941 5' -55.7 NC_003521.1 + 202231 0.66 0.961291
Target:  5'- -cGaACACCCagggacACGGCGUCGcGCcCCACa -3'
miRNA:   3'- gaC-UGUGGG------UGCUGCAGU-CGuGGUGa -5'
13941 5' -55.7 NC_003521.1 + 77396 0.66 0.957785
Target:  5'- gUGGCACCCugGuaggcaGCGgCAGCcgacgacgggGCCACg -3'
miRNA:   3'- gACUGUGGGugC------UGCaGUCG----------UGGUGa -5'
13941 5' -55.7 NC_003521.1 + 71051 0.66 0.957785
Target:  5'- --aGCGCCCAaaGCG-CGGCGCCAUg -3'
miRNA:   3'- gacUGUGGGUgcUGCaGUCGUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 71525 0.66 0.954068
Target:  5'- -cGACGCCgGcCGACGUCaccgAGCccGCCGCc -3'
miRNA:   3'- gaCUGUGGgU-GCUGCAG----UCG--UGGUGa -5'
13941 5' -55.7 NC_003521.1 + 202046 0.66 0.954068
Target:  5'- --uGCAgCCACGACGUCuccucAGCAUgGCg -3'
miRNA:   3'- gacUGUgGGUGCUGCAG-----UCGUGgUGa -5'
13941 5' -55.7 NC_003521.1 + 198254 0.66 0.957785
Target:  5'- gCUGACGCCgcaGCGAuagcCGUCccagcGGCACCAg- -3'
miRNA:   3'- -GACUGUGGg--UGCU----GCAG-----UCGUGGUga -5'
13941 5' -55.7 NC_003521.1 + 180265 0.66 0.970587
Target:  5'- -cGACGaggaugCCACGACGgCGGC-CCGCg -3'
miRNA:   3'- gaCUGUg-----GGUGCUGCaGUCGuGGUGa -5'
13941 5' -55.7 NC_003521.1 + 223411 0.66 0.961291
Target:  5'- gUGGCGCCC-CGGCG-CGGCGUCAa- -3'
miRNA:   3'- gACUGUGGGuGCUGCaGUCGUGGUga -5'
13941 5' -55.7 NC_003521.1 + 153113 0.66 0.961291
Target:  5'- -gGGCGCgCGCGACGgCAGCAggcggcuuugguCCACc -3'
miRNA:   3'- gaCUGUGgGUGCUGCaGUCGU------------GGUGa -5'
13941 5' -55.7 NC_003521.1 + 4621 0.66 0.954068
Target:  5'- aUGACcucACCCGCucCGUCGGCuuuccuGCCACc -3'
miRNA:   3'- gACUG---UGGGUGcuGCAGUCG------UGGUGa -5'
13941 5' -55.7 NC_003521.1 + 28839 0.66 0.961291
Target:  5'- -cGGCGCCUggACGACGagcugCGGCGgCGCg -3'
miRNA:   3'- gaCUGUGGG--UGCUGCa----GUCGUgGUGa -5'
13941 5' -55.7 NC_003521.1 + 210917 0.66 0.957423
Target:  5'- uUGACGgCCACGGgucgucggucguCGUCgcccaggugcaacAGCGCCACg -3'
miRNA:   3'- gACUGUgGGUGCU------------GCAG-------------UCGUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 239379 0.66 0.961291
Target:  5'- gCUGcCACCgGCGGCG-CAGC-UCGCg -3'
miRNA:   3'- -GACuGUGGgUGCUGCaGUCGuGGUGa -5'
13941 5' -55.7 NC_003521.1 + 120928 0.66 0.957785
Target:  5'- -cGGCuGCCCGCGGCGgCGGCuCCGg- -3'
miRNA:   3'- gaCUG-UGGGUGCUGCaGUCGuGGUga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.