miRNA display CGI


Results 1 - 20 of 272 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13941 5' -55.7 NC_003521.1 + 10819 1.09 0.005359
Target:  5'- aCUGACACCCACGACGUCAGCACCACUa -3'
miRNA:   3'- -GACUGUGGGUGCUGCAGUCGUGGUGA- -5'
13941 5' -55.7 NC_003521.1 + 117230 0.79 0.371551
Target:  5'- gCUGACGgCCGCGGCGgcuccCGGCGCCGCc -3'
miRNA:   3'- -GACUGUgGGUGCUGCa----GUCGUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 99615 0.79 0.379498
Target:  5'- cCUGcaGCGCCCgGCGGCG-CAGCGCCACg -3'
miRNA:   3'- -GAC--UGUGGG-UGCUGCaGUCGUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 121614 0.77 0.46491
Target:  5'- gCUGGCGCUCACcaccuGGCG-CAGCGCCACg -3'
miRNA:   3'- -GACUGUGGGUG-----CUGCaGUCGUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 70679 0.77 0.46491
Target:  5'- gCUGGaaaACCgACGGCGUCuGCGCCGCa -3'
miRNA:   3'- -GACUg--UGGgUGCUGCAGuCGUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 224050 0.77 0.483175
Target:  5'- uCUGGCgGCCCACGGCGguaaCGGCGCCGa- -3'
miRNA:   3'- -GACUG-UGGGUGCUGCa---GUCGUGGUga -5'
13941 5' -55.7 NC_003521.1 + 57377 0.76 0.511199
Target:  5'- gUGACGCgCCAgGGCGUCGaucucGCGCCACa -3'
miRNA:   3'- gACUGUG-GGUgCUGCAGU-----CGUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 114963 0.76 0.530251
Target:  5'- -cGGCugCUGCGGCGUCAGuCGCCugUu -3'
miRNA:   3'- gaCUGugGGUGCUGCAGUC-GUGGugA- -5'
13941 5' -55.7 NC_003521.1 + 214348 0.76 0.539874
Target:  5'- cCUGACGCCCgugAUGugGUCGGCG-CGCUg -3'
miRNA:   3'- -GACUGUGGG---UGCugCAGUCGUgGUGA- -5'
13941 5' -55.7 NC_003521.1 + 78583 0.76 0.539874
Target:  5'- uUGACGCCCaccccgccaGCGcCGUCGGCGCUACc -3'
miRNA:   3'- gACUGUGGG---------UGCuGCAGUCGUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 102602 0.75 0.549556
Target:  5'- -cGcCACCC-CGGCGUCGGCGcCCACg -3'
miRNA:   3'- gaCuGUGGGuGCUGCAGUCGU-GGUGa -5'
13941 5' -55.7 NC_003521.1 + 91465 0.75 0.588758
Target:  5'- aCUG-UGCCCACGACGcgcccgCGGUACCGCUu -3'
miRNA:   3'- -GACuGUGGGUGCUGCa-----GUCGUGGUGA- -5'
13941 5' -55.7 NC_003521.1 + 26860 0.75 0.588758
Target:  5'- -cGAUugcCCCAaagGACGUCAGCACCAUUg -3'
miRNA:   3'- gaCUGu--GGGUg--CUGCAGUCGUGGUGA- -5'
13941 5' -55.7 NC_003521.1 + 191134 0.74 0.608562
Target:  5'- uCUGGCagGCUgACGGCGaCAGCGCCGCg -3'
miRNA:   3'- -GACUG--UGGgUGCUGCaGUCGUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 103101 0.74 0.608562
Target:  5'- -gGGCGCCCugGcGCGcuucucgCAGCGCCGCUa -3'
miRNA:   3'- gaCUGUGGGugC-UGCa------GUCGUGGUGA- -5'
13941 5' -55.7 NC_003521.1 + 204097 0.74 0.618492
Target:  5'- -cGACAUCCGCGACGagGGCGUCGCg -3'
miRNA:   3'- gaCUGUGGGUGCUGCagUCGUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 103587 0.74 0.618492
Target:  5'- -cGGCGCUgGCG-CGUCAGCGCCuGCUg -3'
miRNA:   3'- gaCUGUGGgUGCuGCAGUCGUGG-UGA- -5'
13941 5' -55.7 NC_003521.1 + 123722 0.74 0.628432
Target:  5'- gCUGACGCCCAgccUGACGgugcaggugCGGCACgCGCUg -3'
miRNA:   3'- -GACUGUGGGU---GCUGCa--------GUCGUG-GUGA- -5'
13941 5' -55.7 NC_003521.1 + 59435 0.74 0.638374
Target:  5'- cCUGACuGCCCGCGGCG-CcGUGCCGCa -3'
miRNA:   3'- -GACUG-UGGGUGCUGCaGuCGUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 142408 0.74 0.64235
Target:  5'- cCUGGcCGCCCugGccaacgucaccaccaGCGUCGGCACCAg- -3'
miRNA:   3'- -GACU-GUGGGugC---------------UGCAGUCGUGGUga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.