Results 1 - 20 of 272 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13941 | 5' | -55.7 | NC_003521.1 | + | 3704 | 0.72 | 0.755078 |
Target: 5'- cCUG-UGCCCuCGGCGUCGGCAUgGCg -3' miRNA: 3'- -GACuGUGGGuGCUGCAGUCGUGgUGa -5' |
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13941 | 5' | -55.7 | NC_003521.1 | + | 4621 | 0.66 | 0.954068 |
Target: 5'- aUGACcucACCCGCucCGUCGGCuuuccuGCCACc -3' miRNA: 3'- gACUG---UGGGUGcuGCAGUCG------UGGUGa -5' |
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13941 | 5' | -55.7 | NC_003521.1 | + | 7341 | 0.67 | 0.950135 |
Target: 5'- cCUGGC-CUCGCGGC-UCAaCACCACa -3' miRNA: 3'- -GACUGuGGGUGCUGcAGUcGUGGUGa -5' |
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13941 | 5' | -55.7 | NC_003521.1 | + | 7715 | 0.66 | 0.96459 |
Target: 5'- -cGcACGuCCCGCGugGUgCuguGCGCCGCg -3' miRNA: 3'- gaC-UGU-GGGUGCugCA-Gu--CGUGGUGa -5' |
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13941 | 5' | -55.7 | NC_003521.1 | + | 10819 | 1.09 | 0.005359 |
Target: 5'- aCUGACACCCACGACGUCAGCACCACUa -3' miRNA: 3'- -GACUGUGGGUGCUGCAGUCGUGGUGA- -5' |
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13941 | 5' | -55.7 | NC_003521.1 | + | 17973 | 0.66 | 0.957785 |
Target: 5'- -cGGCACCCACGuGCGUugcCAGUAugugguccuCCGCg -3' miRNA: 3'- gaCUGUGGGUGC-UGCA---GUCGU---------GGUGa -5' |
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13941 | 5' | -55.7 | NC_003521.1 | + | 18271 | 0.7 | 0.833744 |
Target: 5'- -gGACcuGCCCGCGACGggagggcccGCACCGCa -3' miRNA: 3'- gaCUG--UGGGUGCUGCagu------CGUGGUGa -5' |
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13941 | 5' | -55.7 | NC_003521.1 | + | 19032 | 0.71 | 0.787874 |
Target: 5'- -gGGCACCagccgucgcagcaGCGAccCGUCGGCGCCACc -3' miRNA: 3'- gaCUGUGGg------------UGCU--GCAGUCGUGGUGa -5' |
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13941 | 5' | -55.7 | NC_003521.1 | + | 19099 | 0.67 | 0.937019 |
Target: 5'- uUGAuCACCCA-GACGgccggCAcGUACCACUg -3' miRNA: 3'- gACU-GUGGGUgCUGCa----GU-CGUGGUGA- -5' |
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13941 | 5' | -55.7 | NC_003521.1 | + | 19143 | 0.67 | 0.941613 |
Target: 5'- -cGAgACCCACGGCGUgGugaccgagaGCACgGCg -3' miRNA: 3'- gaCUgUGGGUGCUGCAgU---------CGUGgUGa -5' |
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13941 | 5' | -55.7 | NC_003521.1 | + | 21780 | 0.69 | 0.878775 |
Target: 5'- -cGAaguaGCCCAUGAUacUCAGCACCAUa -3' miRNA: 3'- gaCUg---UGGGUGCUGc-AGUCGUGGUGa -5' |
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13941 | 5' | -55.7 | NC_003521.1 | + | 26860 | 0.75 | 0.588758 |
Target: 5'- -cGAUugcCCCAaagGACGUCAGCACCAUUg -3' miRNA: 3'- gaCUGu--GGGUg--CUGCAGUCGUGGUGA- -5' |
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13941 | 5' | -55.7 | NC_003521.1 | + | 28839 | 0.66 | 0.961291 |
Target: 5'- -cGGCGCCUggACGACGagcugCGGCGgCGCg -3' miRNA: 3'- gaCUGUGGG--UGCUGCa----GUCGUgGUGa -5' |
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13941 | 5' | -55.7 | NC_003521.1 | + | 28885 | 0.67 | 0.945985 |
Target: 5'- uUGAUGaagACGGCGUgCAGCACCACg -3' miRNA: 3'- gACUGUgggUGCUGCA-GUCGUGGUGa -5' |
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13941 | 5' | -55.7 | NC_003521.1 | + | 29011 | 0.68 | 0.925075 |
Target: 5'- gUGGCgcgGCCCGCGcGCGUCugguugucggcguGCGCCACc -3' miRNA: 3'- gACUG---UGGGUGC-UGCAGu------------CGUGGUGa -5' |
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13941 | 5' | -55.7 | NC_003521.1 | + | 29205 | 0.69 | 0.864539 |
Target: 5'- -gGGCGCCgCGCGugGUauaguGCGCCAUa -3' miRNA: 3'- gaCUGUGG-GUGCugCAgu---CGUGGUGa -5' |
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13941 | 5' | -55.7 | NC_003521.1 | + | 30996 | 0.66 | 0.967687 |
Target: 5'- -cGAC-CCCACGAgGUCGGaggUCACg -3' miRNA: 3'- gaCUGuGGGUGCUgCAGUCgu-GGUGa -5' |
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13941 | 5' | -55.7 | NC_003521.1 | + | 31990 | 0.66 | 0.970587 |
Target: 5'- -aGGCGguggCCGCGGCGUCccAGCACgCGCa -3' miRNA: 3'- gaCUGUg---GGUGCUGCAG--UCGUG-GUGa -5' |
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13941 | 5' | -55.7 | NC_003521.1 | + | 32702 | 0.72 | 0.755078 |
Target: 5'- uCUGACGCCCAucCGuaacCGUCAggaggccguGCGCCACg -3' miRNA: 3'- -GACUGUGGGU--GCu---GCAGU---------CGUGGUGa -5' |
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13941 | 5' | -55.7 | NC_003521.1 | + | 32879 | 0.72 | 0.755078 |
Target: 5'- uUGGCGCCCGCGcCGcCGGUGCUGCc -3' miRNA: 3'- gACUGUGGGUGCuGCaGUCGUGGUGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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