miRNA display CGI


Results 1 - 20 of 272 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13941 5' -55.7 NC_003521.1 + 3704 0.72 0.755078
Target:  5'- cCUG-UGCCCuCGGCGUCGGCAUgGCg -3'
miRNA:   3'- -GACuGUGGGuGCUGCAGUCGUGgUGa -5'
13941 5' -55.7 NC_003521.1 + 4621 0.66 0.954068
Target:  5'- aUGACcucACCCGCucCGUCGGCuuuccuGCCACc -3'
miRNA:   3'- gACUG---UGGGUGcuGCAGUCG------UGGUGa -5'
13941 5' -55.7 NC_003521.1 + 7341 0.67 0.950135
Target:  5'- cCUGGC-CUCGCGGC-UCAaCACCACa -3'
miRNA:   3'- -GACUGuGGGUGCUGcAGUcGUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 7715 0.66 0.96459
Target:  5'- -cGcACGuCCCGCGugGUgCuguGCGCCGCg -3'
miRNA:   3'- gaC-UGU-GGGUGCugCA-Gu--CGUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 10819 1.09 0.005359
Target:  5'- aCUGACACCCACGACGUCAGCACCACUa -3'
miRNA:   3'- -GACUGUGGGUGCUGCAGUCGUGGUGA- -5'
13941 5' -55.7 NC_003521.1 + 17973 0.66 0.957785
Target:  5'- -cGGCACCCACGuGCGUugcCAGUAugugguccuCCGCg -3'
miRNA:   3'- gaCUGUGGGUGC-UGCA---GUCGU---------GGUGa -5'
13941 5' -55.7 NC_003521.1 + 18271 0.7 0.833744
Target:  5'- -gGACcuGCCCGCGACGggagggcccGCACCGCa -3'
miRNA:   3'- gaCUG--UGGGUGCUGCagu------CGUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 19032 0.71 0.787874
Target:  5'- -gGGCACCagccgucgcagcaGCGAccCGUCGGCGCCACc -3'
miRNA:   3'- gaCUGUGGg------------UGCU--GCAGUCGUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 19099 0.67 0.937019
Target:  5'- uUGAuCACCCA-GACGgccggCAcGUACCACUg -3'
miRNA:   3'- gACU-GUGGGUgCUGCa----GU-CGUGGUGA- -5'
13941 5' -55.7 NC_003521.1 + 19143 0.67 0.941613
Target:  5'- -cGAgACCCACGGCGUgGugaccgagaGCACgGCg -3'
miRNA:   3'- gaCUgUGGGUGCUGCAgU---------CGUGgUGa -5'
13941 5' -55.7 NC_003521.1 + 21780 0.69 0.878775
Target:  5'- -cGAaguaGCCCAUGAUacUCAGCACCAUa -3'
miRNA:   3'- gaCUg---UGGGUGCUGc-AGUCGUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 26860 0.75 0.588758
Target:  5'- -cGAUugcCCCAaagGACGUCAGCACCAUUg -3'
miRNA:   3'- gaCUGu--GGGUg--CUGCAGUCGUGGUGA- -5'
13941 5' -55.7 NC_003521.1 + 28839 0.66 0.961291
Target:  5'- -cGGCGCCUggACGACGagcugCGGCGgCGCg -3'
miRNA:   3'- gaCUGUGGG--UGCUGCa----GUCGUgGUGa -5'
13941 5' -55.7 NC_003521.1 + 28885 0.67 0.945985
Target:  5'- uUGAUGaagACGGCGUgCAGCACCACg -3'
miRNA:   3'- gACUGUgggUGCUGCA-GUCGUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 29011 0.68 0.925075
Target:  5'- gUGGCgcgGCCCGCGcGCGUCugguugucggcguGCGCCACc -3'
miRNA:   3'- gACUG---UGGGUGC-UGCAGu------------CGUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 29205 0.69 0.864539
Target:  5'- -gGGCGCCgCGCGugGUauaguGCGCCAUa -3'
miRNA:   3'- gaCUGUGG-GUGCugCAgu---CGUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 30996 0.66 0.967687
Target:  5'- -cGAC-CCCACGAgGUCGGaggUCACg -3'
miRNA:   3'- gaCUGuGGGUGCUgCAGUCgu-GGUGa -5'
13941 5' -55.7 NC_003521.1 + 31990 0.66 0.970587
Target:  5'- -aGGCGguggCCGCGGCGUCccAGCACgCGCa -3'
miRNA:   3'- gaCUGUg---GGUGCUGCAG--UCGUG-GUGa -5'
13941 5' -55.7 NC_003521.1 + 32702 0.72 0.755078
Target:  5'- uCUGACGCCCAucCGuaacCGUCAggaggccguGCGCCACg -3'
miRNA:   3'- -GACUGUGGGU--GCu---GCAGU---------CGUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 32879 0.72 0.755078
Target:  5'- uUGGCGCCCGCGcCGcCGGUGCUGCc -3'
miRNA:   3'- gACUGUGGGUGCuGCaGUCGUGGUGa -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.