miRNA display CGI


Results 1 - 20 of 272 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13941 5' -55.7 NC_003521.1 + 59969 0.71 0.764338
Target:  5'- -gGAacaaAUCCGCGACGUCAGCuACCGg- -3'
miRNA:   3'- gaCUg---UGGGUGCUGCAGUCG-UGGUga -5'
13941 5' -55.7 NC_003521.1 + 111175 0.72 0.726717
Target:  5'- -cGGcCGCCC-CGGCGaCGGCGCCGCg -3'
miRNA:   3'- gaCU-GUGGGuGCUGCaGUCGUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 126785 0.72 0.726717
Target:  5'- cCUGGCGCUgCGCGugGUCcAGCuCCGCg -3'
miRNA:   3'- -GACUGUGG-GUGCugCAG-UCGuGGUGa -5'
13941 5' -55.7 NC_003521.1 + 225615 0.72 0.726717
Target:  5'- cCUGcaGC-CCCACGAUGUCGGgaucCACCACg -3'
miRNA:   3'- -GAC--UGuGGGUGCUGCAGUC----GUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 60599 0.72 0.745716
Target:  5'- -cGAgGCCCAC-ACGcgCGGCACCACc -3'
miRNA:   3'- gaCUgUGGGUGcUGCa-GUCGUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 69198 0.72 0.745716
Target:  5'- -aGACAUaCC-CGACGUCGGCGgCACUc -3'
miRNA:   3'- gaCUGUG-GGuGCUGCAGUCGUgGUGA- -5'
13941 5' -55.7 NC_003521.1 + 32879 0.72 0.755078
Target:  5'- uUGGCGCCCGCGcCGcCGGUGCUGCc -3'
miRNA:   3'- gACUGUGGGUGCuGCaGUCGUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 38704 0.72 0.755078
Target:  5'- aUGAUACUCGCgGGCGUCcugguGGCGCUACUu -3'
miRNA:   3'- gACUGUGGGUG-CUGCAG-----UCGUGGUGA- -5'
13941 5' -55.7 NC_003521.1 + 118182 0.72 0.755078
Target:  5'- -cGACGCCCGcCGGCaaaGUCGGgGCCGCc -3'
miRNA:   3'- gaCUGUGGGU-GCUG---CAGUCgUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 135440 0.73 0.707412
Target:  5'- uUGGCGCCCGCGGgaacCGUCGGU-CCGCc -3'
miRNA:   3'- gACUGUGGGUGCU----GCAGUCGuGGUGa -5'
13941 5' -55.7 NC_003521.1 + 118276 0.73 0.668144
Target:  5'- -cGGCACCaGCGGCGguagCAGCAgCACUa -3'
miRNA:   3'- gaCUGUGGgUGCUGCa---GUCGUgGUGA- -5'
13941 5' -55.7 NC_003521.1 + 201543 0.73 0.658238
Target:  5'- -cGGCGCCgGCGACGU-GGCGCgGCUg -3'
miRNA:   3'- gaCUGUGGgUGCUGCAgUCGUGgUGA- -5'
13941 5' -55.7 NC_003521.1 + 99615 0.79 0.379498
Target:  5'- cCUGcaGCGCCCgGCGGCG-CAGCGCCACg -3'
miRNA:   3'- -GAC--UGUGGG-UGCUGCaGUCGUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 121614 0.77 0.46491
Target:  5'- gCUGGCGCUCACcaccuGGCG-CAGCGCCACg -3'
miRNA:   3'- -GACUGUGGGUG-----CUGCaGUCGUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 70679 0.77 0.46491
Target:  5'- gCUGGaaaACCgACGGCGUCuGCGCCGCa -3'
miRNA:   3'- -GACUg--UGGgUGCUGCAGuCGUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 57377 0.76 0.511199
Target:  5'- gUGACGCgCCAgGGCGUCGaucucGCGCCACa -3'
miRNA:   3'- gACUGUG-GGUgCUGCAGU-----CGUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 114963 0.76 0.530251
Target:  5'- -cGGCugCUGCGGCGUCAGuCGCCugUu -3'
miRNA:   3'- gaCUGugGGUGCUGCAGUC-GUGGugA- -5'
13941 5' -55.7 NC_003521.1 + 78583 0.76 0.539874
Target:  5'- uUGACGCCCaccccgccaGCGcCGUCGGCGCUACc -3'
miRNA:   3'- gACUGUGGG---------UGCuGCAGUCGUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 191134 0.74 0.608562
Target:  5'- uCUGGCagGCUgACGGCGaCAGCGCCGCg -3'
miRNA:   3'- -GACUG--UGGgUGCUGCaGUCGUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 142408 0.74 0.64235
Target:  5'- cCUGGcCGCCCugGccaacgucaccaccaGCGUCGGCACCAg- -3'
miRNA:   3'- -GACU-GUGGGugC---------------UGCAGUCGUGGUga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.