miRNA display CGI


Results 21 - 40 of 272 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13941 5' -55.7 NC_003521.1 + 112979 0.66 0.96459
Target:  5'- aUGcCGCUCAgCGGCG--GGCGCCACUa -3'
miRNA:   3'- gACuGUGGGU-GCUGCagUCGUGGUGA- -5'
13941 5' -55.7 NC_003521.1 + 217815 0.66 0.96459
Target:  5'- aUGACGgCgaGCGACGU--GCACCGCUu -3'
miRNA:   3'- gACUGUgGg-UGCUGCAguCGUGGUGA- -5'
13941 5' -55.7 NC_003521.1 + 49099 0.66 0.96459
Target:  5'- -cGAUAUCCacaaagugcGCGugGUgaccgCGGCGCCGCUg -3'
miRNA:   3'- gaCUGUGGG---------UGCugCA-----GUCGUGGUGA- -5'
13941 5' -55.7 NC_003521.1 + 226896 0.66 0.96459
Target:  5'- -gGGCA-CCACGGCGgcCAGCGCgGCc -3'
miRNA:   3'- gaCUGUgGGUGCUGCa-GUCGUGgUGa -5'
13941 5' -55.7 NC_003521.1 + 80103 0.66 0.96459
Target:  5'- -cGGCGCgaCCACGAUGUUgggAGCGCC-CUu -3'
miRNA:   3'- gaCUGUG--GGUGCUGCAG---UCGUGGuGA- -5'
13941 5' -55.7 NC_003521.1 + 114872 0.66 0.96459
Target:  5'- -gGGCGCCCAUGACGa----ACCACa -3'
miRNA:   3'- gaCUGUGGGUGCUGCagucgUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 7715 0.66 0.96459
Target:  5'- -cGcACGuCCCGCGugGUgCuguGCGCCGCg -3'
miRNA:   3'- gaC-UGU-GGGUGCugCA-Gu--CGUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 49751 0.66 0.96459
Target:  5'- cCUGGCGCCCAguAUGUCgcaguucuGGCACgGCg -3'
miRNA:   3'- -GACUGUGGGUgcUGCAG--------UCGUGgUGa -5'
13941 5' -55.7 NC_003521.1 + 103462 0.66 0.96427
Target:  5'- --uGCGCgCCACGGCGUaggcgacgaacugCGGCACgCGCUg -3'
miRNA:   3'- gacUGUG-GGUGCUGCA-------------GUCGUG-GUGA- -5'
13941 5' -55.7 NC_003521.1 + 35219 0.66 0.96427
Target:  5'- uCUGGCcgaccucugcguGCgCCGCGACuacgaggGUCuGCGCCGCUa -3'
miRNA:   3'- -GACUG------------UG-GGUGCUG-------CAGuCGUGGUGA- -5'
13941 5' -55.7 NC_003521.1 + 126035 0.66 0.962636
Target:  5'- -cGGCugCCugaGCGACGUgcuguacaacacgaGGCACCGCg -3'
miRNA:   3'- gaCUGugGG---UGCUGCAg-------------UCGUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 163087 0.66 0.961291
Target:  5'- -cGAgGCCgGCccguccucgGGCGcCAGCGCCACg -3'
miRNA:   3'- gaCUgUGGgUG---------CUGCaGUCGUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 239085 0.66 0.961291
Target:  5'- -cGaACACCCagggacACGGCGUCGcGCcCCACa -3'
miRNA:   3'- gaC-UGUGGG------UGCUGCAGU-CGuGGUGa -5'
13941 5' -55.7 NC_003521.1 + 28839 0.66 0.961291
Target:  5'- -cGGCGCCUggACGACGagcugCGGCGgCGCg -3'
miRNA:   3'- gaCUGUGGG--UGCUGCa----GUCGUgGUGa -5'
13941 5' -55.7 NC_003521.1 + 42892 0.66 0.961291
Target:  5'- aUGAUgaauUCCAUGGCGgcgaCGGCGCCGCc -3'
miRNA:   3'- gACUGu---GGGUGCUGCa---GUCGUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 202231 0.66 0.961291
Target:  5'- -cGaACACCCagggacACGGCGUCGcGCcCCACa -3'
miRNA:   3'- gaC-UGUGGG------UGCUGCAGU-CGuGGUGa -5'
13941 5' -55.7 NC_003521.1 + 154053 0.66 0.961291
Target:  5'- -aGGCGCCCAUaaaGcCGUgCAGCAgCCGCa -3'
miRNA:   3'- gaCUGUGGGUG---CuGCA-GUCGU-GGUGa -5'
13941 5' -55.7 NC_003521.1 + 113351 0.66 0.961291
Target:  5'- cCUG-CACCCgGCGGcCGUCuGCGCCuCg -3'
miRNA:   3'- -GACuGUGGG-UGCU-GCAGuCGUGGuGa -5'
13941 5' -55.7 NC_003521.1 + 132386 0.66 0.961291
Target:  5'- -cGcACACCCGCGAgGUCauccGGCAgaCGCUg -3'
miRNA:   3'- gaC-UGUGGGUGCUgCAG----UCGUg-GUGA- -5'
13941 5' -55.7 NC_003521.1 + 121883 0.66 0.961291
Target:  5'- gUGGCGCugcgCCAgGugGUgAGCGCCAg- -3'
miRNA:   3'- gACUGUG----GGUgCugCAgUCGUGGUga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.