miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13942 3' -51 NC_003521.1 + 12409 1.07 0.015374
Target:  5'- aAUCCACACUUUAUUAAGGCCGCCGCAc -3'
miRNA:   3'- -UAGGUGUGAAAUAAUUCCGGCGGCGU- -5'
13942 3' -51 NC_003521.1 + 69857 0.72 0.896079
Target:  5'- --aCGCGCcga--UGAGGCCGCCGCGc -3'
miRNA:   3'- uagGUGUGaaauaAUUCCGGCGGCGU- -5'
13942 3' -51 NC_003521.1 + 233170 0.72 0.902659
Target:  5'- uGUCCGCGCcgccgUGGcGGCCGCCGUu -3'
miRNA:   3'- -UAGGUGUGaaauaAUU-CCGGCGGCGu -5'
13942 3' -51 NC_003521.1 + 43715 0.72 0.902659
Target:  5'- -cCCGCugUgagaGUUccAGGGCCGCCGCc -3'
miRNA:   3'- uaGGUGugAaa--UAA--UUCCGGCGGCGu -5'
13942 3' -51 NC_003521.1 + 54148 0.72 0.915084
Target:  5'- -aCCGCcgGCgUUGgaGAGGCCGCCGCc -3'
miRNA:   3'- uaGGUG--UGaAAUaaUUCCGGCGGCGu -5'
13942 3' -51 NC_003521.1 + 103512 0.72 0.915084
Target:  5'- aGUgCACGCgcgaaccgUUAUUcuuGGGCCGCCGCc -3'
miRNA:   3'- -UAgGUGUGa-------AAUAAu--UCCGGCGGCGu -5'
13942 3' -51 NC_003521.1 + 136558 0.72 0.920924
Target:  5'- cUCCACcuGCUUU-UUGAGGCgGUCGCGc -3'
miRNA:   3'- uAGGUG--UGAAAuAAUUCCGgCGGCGU- -5'
13942 3' -51 NC_003521.1 + 87919 0.71 0.945925
Target:  5'- cUCCugGCU-------GGCCGCCGCGc -3'
miRNA:   3'- uAGGugUGAaauaauuCCGGCGGCGU- -5'
13942 3' -51 NC_003521.1 + 142314 0.7 0.9564
Target:  5'- -gCCGCGCgcgUcgUcgcaacugggugcgcGAGGCCGCCGCc -3'
miRNA:   3'- uaGGUGUGaa-AuaA---------------UUCCGGCGGCGu -5'
13942 3' -51 NC_003521.1 + 54760 0.7 0.958691
Target:  5'- gGUCCACGCc------GGGCCGCCGg- -3'
miRNA:   3'- -UAGGUGUGaaauaauUCCGGCGGCgu -5'
13942 3' -51 NC_003521.1 + 71683 0.7 0.962325
Target:  5'- cGUCCuCugUcagGUUcGGGGCCGCCGCc -3'
miRNA:   3'- -UAGGuGugAaa-UAA-UUCCGGCGGCGu -5'
13942 3' -51 NC_003521.1 + 45818 0.7 0.966058
Target:  5'- cUCCACGCUcaccauucGCCGCCGCu -3'
miRNA:   3'- uAGGUGUGAaauaauucCGGCGGCGu -5'
13942 3' -51 NC_003521.1 + 203408 0.7 0.968913
Target:  5'- -gCCACGCcuccc--AGGCCGUCGCAc -3'
miRNA:   3'- uaGGUGUGaaauaauUCCGGCGGCGU- -5'
13942 3' -51 NC_003521.1 + 379 0.69 0.973558
Target:  5'- uUCUGCACggcucc--GGCCGCCGCu -3'
miRNA:   3'- uAGGUGUGaaauaauuCCGGCGGCGu -5'
13942 3' -51 NC_003521.1 + 240928 0.69 0.973558
Target:  5'- uUCUGCACggcucc--GGCCGCCGCu -3'
miRNA:   3'- uAGGUGUGaaauaauuCCGGCGGCGu -5'
13942 3' -51 NC_003521.1 + 200388 0.69 0.973558
Target:  5'- uUCUGCACggcucc--GGCCGCCGCu -3'
miRNA:   3'- uAGGUGUGaaauaauuCCGGCGGCGu -5'
13942 3' -51 NC_003521.1 + 208879 0.69 0.97383
Target:  5'- -aCCGCGgUgacuggcuauGGCCGCCGCAa -3'
miRNA:   3'- uaGGUGUgAaauaauu---CCGGCGGCGU- -5'
13942 3' -51 NC_003521.1 + 125892 0.69 0.976445
Target:  5'- gGUCCACGCccagcaugcacGAGGCCcgGCCGCGc -3'
miRNA:   3'- -UAGGUGUGaaauaa-----UUCCGG--CGGCGU- -5'
13942 3' -51 NC_003521.1 + 120850 0.69 0.976944
Target:  5'- -gCCAUGCUggAcucggccUUGAGGCgGCCGCGc -3'
miRNA:   3'- uaGGUGUGAaaU-------AAUUCCGgCGGCGU- -5'
13942 3' -51 NC_003521.1 + 102435 0.69 0.97863
Target:  5'- gAUCCAgACgcgccgcAGGCCGCgGCAg -3'
miRNA:   3'- -UAGGUgUGaaauaauUCCGGCGgCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.