miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13942 3' -51 NC_003521.1 + 75711 0.66 0.995677
Target:  5'- cGUCCGCACcaca-----GCCGCCGCu -3'
miRNA:   3'- -UAGGUGUGaaauaauucCGGCGGCGu -5'
13942 3' -51 NC_003521.1 + 45774 0.66 0.995609
Target:  5'- aGUCCAUGCggcucgacggcgacgUGUagAAGGCUGCCGUg -3'
miRNA:   3'- -UAGGUGUGaa-------------AUAa-UUCCGGCGGCGu -5'
13942 3' -51 NC_003521.1 + 179985 0.67 0.994325
Target:  5'- uGUUCAUGCUcucgc-GGGCCGCCGUc -3'
miRNA:   3'- -UAGGUGUGAaauaauUCCGGCGGCGu -5'
13942 3' -51 NC_003521.1 + 223625 0.67 0.994325
Target:  5'- -gUCGCuGCUgacc-AAGGCCGCCGCc -3'
miRNA:   3'- uaGGUG-UGAaauaaUUCCGGCGGCGu -5'
13942 3' -51 NC_003521.1 + 73100 0.67 0.994325
Target:  5'- -gCCGCGCcc-----AGGCCGUCGCGg -3'
miRNA:   3'- uaGGUGUGaaauaauUCCGGCGGCGU- -5'
13942 3' -51 NC_003521.1 + 163490 0.67 0.993982
Target:  5'- cGUCCGCGaguccc--AGGCCGCCGgAg -3'
miRNA:   3'- -UAGGUGUgaaauaauUCCGGCGGCgU- -5'
13942 3' -51 NC_003521.1 + 223451 0.67 0.993438
Target:  5'- gGUCC-CuCUcgAgucuGGGCCGCCGCGc -3'
miRNA:   3'- -UAGGuGuGAaaUaau-UCCGGCGGCGU- -5'
13942 3' -51 NC_003521.1 + 921 0.67 0.993438
Target:  5'- cUCCAaagacaACUag---AAGGCCGCUGCGa -3'
miRNA:   3'- uAGGUg-----UGAaauaaUUCCGGCGGCGU- -5'
13942 3' -51 NC_003521.1 + 118233 0.67 0.993248
Target:  5'- cGUCguaGCGCUggugcu-GGCCGCCGCc -3'
miRNA:   3'- -UAGg--UGUGAaauaauuCCGGCGGCGu -5'
13942 3' -51 NC_003521.1 + 31886 0.67 0.992443
Target:  5'- -aCCGCACcgcc---AGGCCGCgGCAc -3'
miRNA:   3'- uaGGUGUGaaauaauUCCGGCGgCGU- -5'
13942 3' -51 NC_003521.1 + 43763 0.67 0.991332
Target:  5'- ---gGCGCUgacggAUguuGGCCGCCGCGg -3'
miRNA:   3'- uaggUGUGAaa---UAauuCCGGCGGCGU- -5'
13942 3' -51 NC_003521.1 + 164602 0.67 0.991332
Target:  5'- -gCCACGCcacc----GGCCGCCGCc -3'
miRNA:   3'- uaGGUGUGaaauaauuCCGGCGGCGu -5'
13942 3' -51 NC_003521.1 + 166432 0.67 0.991214
Target:  5'- cGUCCACGCacgUGUagaucgAGGGCgagccguCGCCGCAc -3'
miRNA:   3'- -UAGGUGUGaa-AUAa-----UUCCG-------GCGGCGU- -5'
13942 3' -51 NC_003521.1 + 41983 0.68 0.990095
Target:  5'- -gCCGCGCcUUcUUAAGGUCGCaGCAg -3'
miRNA:   3'- uaGGUGUGaAAuAAUUCCGGCGgCGU- -5'
13942 3' -51 NC_003521.1 + 125999 0.68 0.988725
Target:  5'- uGUCCguGCACcgu-----GGCCGCCGCGu -3'
miRNA:   3'- -UAGG--UGUGaaauaauuCCGGCGGCGU- -5'
13942 3' -51 NC_003521.1 + 117202 0.68 0.988725
Target:  5'- cGUCCACGCU--GUUGcccagcAGGCCGuaGCu -3'
miRNA:   3'- -UAGGUGUGAaaUAAU------UCCGGCggCGu -5'
13942 3' -51 NC_003521.1 + 227159 0.68 0.98858
Target:  5'- -gCCGCGCU-------GGCCGCCGUg -3'
miRNA:   3'- uaGGUGUGAaauaauuCCGGCGGCGu -5'
13942 3' -51 NC_003521.1 + 221920 0.68 0.987212
Target:  5'- -gCCACcCUUc---GGGGCUGCCGCGg -3'
miRNA:   3'- uaGGUGuGAAauaaUUCCGGCGGCGU- -5'
13942 3' -51 NC_003521.1 + 164990 0.69 0.981725
Target:  5'- -cCCGCGCUggugguAGGCCGCacCGCGu -3'
miRNA:   3'- uaGGUGUGAaauaauUCCGGCG--GCGU- -5'
13942 3' -51 NC_003521.1 + 160790 0.69 0.981304
Target:  5'- cUCCGCGuacgag-GAGGCUGCCGCc -3'
miRNA:   3'- uAGGUGUgaaauaaUUCCGGCGGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.