Results 41 - 60 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13942 | 3' | -51 | NC_003521.1 | + | 227907 | 0.66 | 0.99696 |
Target: 5'- gGUCCugACcaggcgUGccgcucGGGCCGCCGUg -3' miRNA: 3'- -UAGGugUGaaaua-AU------UCCGGCGGCGu -5' |
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13942 | 3' | -51 | NC_003521.1 | + | 197750 | 0.66 | 0.99696 |
Target: 5'- cUCCGCGCcg---UccGGcCCGCCGCGc -3' miRNA: 3'- uAGGUGUGaaauaAuuCC-GGCGGCGU- -5' |
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13942 | 3' | -51 | NC_003521.1 | + | 59880 | 0.66 | 0.99696 |
Target: 5'- -gCCGCGgUcgccgccGGGGCCGCCGCc -3' miRNA: 3'- uaGGUGUgAaauaa--UUCCGGCGGCGu -5' |
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13942 | 3' | -51 | NC_003521.1 | + | 223655 | 0.66 | 0.997294 |
Target: 5'- -gCCACACggcccgcgucGGGgCGCCGCGa -3' miRNA: 3'- uaGGUGUGaaauaau---UCCgGCGGCGU- -5' |
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13942 | 3' | -51 | NC_003521.1 | + | 89490 | 0.66 | 0.997428 |
Target: 5'- cUCCGCGCUg----GAGGUCgGCCGg- -3' miRNA: 3'- uAGGUGUGAaauaaUUCCGG-CGGCgu -5' |
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13942 | 3' | -51 | NC_003521.1 | + | 164035 | 0.66 | 0.997428 |
Target: 5'- -gCCGCuACcgUUGUUGccGCCGCCGUg -3' miRNA: 3'- uaGGUG-UGa-AAUAAUucCGGCGGCGu -5' |
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13942 | 3' | -51 | NC_003521.1 | + | 117202 | 0.68 | 0.988725 |
Target: 5'- cGUCCACGCU--GUUGcccagcAGGCCGuaGCu -3' miRNA: 3'- -UAGGUGUGAaaUAAU------UCCGGCggCGu -5' |
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13942 | 3' | -51 | NC_003521.1 | + | 227159 | 0.68 | 0.98858 |
Target: 5'- -gCCGCGCU-------GGCCGCCGUg -3' miRNA: 3'- uaGGUGUGAaauaauuCCGGCGGCGu -5' |
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13942 | 3' | -51 | NC_003521.1 | + | 43715 | 0.72 | 0.902659 |
Target: 5'- -cCCGCugUgagaGUUccAGGGCCGCCGCc -3' miRNA: 3'- uaGGUGugAaa--UAA--UUCCGGCGGCGu -5' |
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13942 | 3' | -51 | NC_003521.1 | + | 103512 | 0.72 | 0.915084 |
Target: 5'- aGUgCACGCgcgaaccgUUAUUcuuGGGCCGCCGCc -3' miRNA: 3'- -UAgGUGUGa-------AAUAAu--UCCGGCGGCGu -5' |
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13942 | 3' | -51 | NC_003521.1 | + | 136558 | 0.72 | 0.920924 |
Target: 5'- cUCCACcuGCUUU-UUGAGGCgGUCGCGc -3' miRNA: 3'- uAGGUG--UGAAAuAAUUCCGgCGGCGU- -5' |
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13942 | 3' | -51 | NC_003521.1 | + | 54760 | 0.7 | 0.958691 |
Target: 5'- gGUCCACGCc------GGGCCGCCGg- -3' miRNA: 3'- -UAGGUGUGaaauaauUCCGGCGGCgu -5' |
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13942 | 3' | -51 | NC_003521.1 | + | 71683 | 0.7 | 0.962325 |
Target: 5'- cGUCCuCugUcagGUUcGGGGCCGCCGCc -3' miRNA: 3'- -UAGGuGugAaa-UAA-UUCCGGCGGCGu -5' |
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13942 | 3' | -51 | NC_003521.1 | + | 45818 | 0.7 | 0.966058 |
Target: 5'- cUCCACGCUcaccauucGCCGCCGCu -3' miRNA: 3'- uAGGUGUGAaauaauucCGGCGGCGu -5' |
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13942 | 3' | -51 | NC_003521.1 | + | 240928 | 0.69 | 0.973558 |
Target: 5'- uUCUGCACggcucc--GGCCGCCGCu -3' miRNA: 3'- uAGGUGUGaaauaauuCCGGCGGCGu -5' |
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13942 | 3' | -51 | NC_003521.1 | + | 379 | 0.69 | 0.973558 |
Target: 5'- uUCUGCACggcucc--GGCCGCCGCu -3' miRNA: 3'- uAGGUGUGaaauaauuCCGGCGGCGu -5' |
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13942 | 3' | -51 | NC_003521.1 | + | 208879 | 0.69 | 0.97383 |
Target: 5'- -aCCGCGgUgacuggcuauGGCCGCCGCAa -3' miRNA: 3'- uaGGUGUgAaauaauu---CCGGCGGCGU- -5' |
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13942 | 3' | -51 | NC_003521.1 | + | 142564 | 0.69 | 0.979094 |
Target: 5'- --aCGCGCgcggcu-GGGCCGCUGCAg -3' miRNA: 3'- uagGUGUGaaauaauUCCGGCGGCGU- -5' |
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13942 | 3' | -51 | NC_003521.1 | + | 160790 | 0.69 | 0.981304 |
Target: 5'- cUCCGCGuacgag-GAGGCUGCCGCc -3' miRNA: 3'- uAGGUGUgaaauaaUUCCGGCGGCGu -5' |
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13942 | 3' | -51 | NC_003521.1 | + | 164990 | 0.69 | 0.981725 |
Target: 5'- -cCCGCGCUggugguAGGCCGCacCGCGu -3' miRNA: 3'- uaGGUGUGAaauaauUCCGGCG--GCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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