miRNA display CGI


Results 1 - 20 of 207 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13942 5' -54.6 NC_003521.1 + 40914 0.66 0.975079
Target:  5'- uAGCgagGCGGgGGCGGCccGGggGaGCGCc -3'
miRNA:   3'- -UCG---CGCCgCCGCCGuaCUaaUaUGUG- -5'
13942 5' -54.6 NC_003521.1 + 218432 0.66 0.977522
Target:  5'- cAGCGaCaGCGGCGGCAccacgGAgg--ACAUg -3'
miRNA:   3'- -UCGC-GcCGCCGCCGUa----CUaauaUGUG- -5'
13942 5' -54.6 NC_003521.1 + 71105 0.66 0.977522
Target:  5'- gAG-GCGGCGGCGGgggacgcuuucCAUGAggccUUGcUGCGCc -3'
miRNA:   3'- -UCgCGCCGCCGCC-----------GUACU----AAU-AUGUG- -5'
13942 5' -54.6 NC_003521.1 + 57587 0.66 0.977522
Target:  5'- gGGCGcCGGCGGCGaaccccgagucaGCGUGccgucGCGCu -3'
miRNA:   3'- -UCGC-GCCGCCGC------------CGUACuaauaUGUG- -5'
13942 5' -54.6 NC_003521.1 + 87472 0.66 0.977522
Target:  5'- cAGCGCuguaGCGGCGGCcgaaGGUgcccaGCACa -3'
miRNA:   3'- -UCGCGc---CGCCGCCGua--CUAaua--UGUG- -5'
13942 5' -54.6 NC_003521.1 + 150663 0.66 0.975079
Target:  5'- aGGCGgcucucCGGCGGCGGCGccgcugcugcUGggUGcugcUGCGCc -3'
miRNA:   3'- -UCGC------GCCGCCGCCGU----------ACuaAU----AUGUG- -5'
13942 5' -54.6 NC_003521.1 + 226367 0.66 0.975332
Target:  5'- cGCGgGaGCGGCGGCugacgccgccgcagGGccgUGUGCACc -3'
miRNA:   3'- uCGCgC-CGCCGCCGua------------CUa--AUAUGUG- -5'
13942 5' -54.6 NC_003521.1 + 91288 0.66 0.970777
Target:  5'- uGCGCGGUcucgguuacuauacGCGcGUAUGcgUGUGCGCg -3'
miRNA:   3'- uCGCGCCGc-------------CGC-CGUACuaAUAUGUG- -5'
13942 5' -54.6 NC_003521.1 + 218629 0.66 0.975079
Target:  5'- cGCGCGGCGGUaagcggccacGGCcgGcg---GCGCc -3'
miRNA:   3'- uCGCGCCGCCG----------CCGuaCuaauaUGUG- -5'
13942 5' -54.6 NC_003521.1 + 192884 0.66 0.972449
Target:  5'- gAGCGCGaCGGCGGU-UGAcgAUcagcaGCGCg -3'
miRNA:   3'- -UCGCGCcGCCGCCGuACUaaUA-----UGUG- -5'
13942 5' -54.6 NC_003521.1 + 224016 0.66 0.972449
Target:  5'- cAGCgGCGGgccCGGCGGUcgGGgcggGCGCc -3'
miRNA:   3'- -UCG-CGCC---GCCGCCGuaCUaauaUGUG- -5'
13942 5' -54.6 NC_003521.1 + 128239 0.66 0.97431
Target:  5'- uGGCGCGGUcGCGGUucagcagguaggccGUGGUgggcaGCGCg -3'
miRNA:   3'- -UCGCGCCGcCGCCG--------------UACUAaua--UGUG- -5'
13942 5' -54.6 NC_003521.1 + 17661 0.66 0.975079
Target:  5'- gAGCGauGCGGCcuccagacugcgGGCGUGGUUcu-CGCg -3'
miRNA:   3'- -UCGCgcCGCCG------------CCGUACUAAuauGUG- -5'
13942 5' -54.6 NC_003521.1 + 168577 0.66 0.969623
Target:  5'- aGGUgGCGGCugacccagcGGCGGCAUGGacAUGgGCu -3'
miRNA:   3'- -UCG-CGCCG---------CCGCCGUACUaaUAUgUG- -5'
13942 5' -54.6 NC_003521.1 + 104006 0.66 0.972449
Target:  5'- -aCGCGGCGcGaGGCGUGAUguuuCACc -3'
miRNA:   3'- ucGCGCCGC-CgCCGUACUAauauGUG- -5'
13942 5' -54.6 NC_003521.1 + 145577 0.66 0.977522
Target:  5'- cGUGCuGCGGCGGCAcGAcgcgGCGg -3'
miRNA:   3'- uCGCGcCGCCGCCGUaCUaauaUGUg -5'
13942 5' -54.6 NC_003521.1 + 105938 0.66 0.971342
Target:  5'- cGUGUGGcCGGCGcGgAUGAUgaccgugugucggGUGCGCa -3'
miRNA:   3'- uCGCGCC-GCCGC-CgUACUAa------------UAUGUG- -5'
13942 5' -54.6 NC_003521.1 + 226152 0.66 0.977522
Target:  5'- --aGCGGCGGCacucGGCGUcGUUcaGCGCg -3'
miRNA:   3'- ucgCGCCGCCG----CCGUAcUAAuaUGUG- -5'
13942 5' -54.6 NC_003521.1 + 214822 0.66 0.969623
Target:  5'- gGGCGCGGCGaCGGCGguuccAUGCu- -3'
miRNA:   3'- -UCGCGCCGCcGCCGUacuaaUAUGug -5'
13942 5' -54.6 NC_003521.1 + 65717 0.66 0.977522
Target:  5'- cGGCGCcGCGGCGGCccUGGccg-GCAa -3'
miRNA:   3'- -UCGCGcCGCCGCCGu-ACUaauaUGUg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.