miRNA display CGI


Results 1 - 20 of 207 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13942 5' -54.6 NC_003521.1 + 12375 1.1 0.004429
Target:  5'- gAGCGCGGCGGCGGCAUGAUUAUACACa -3'
miRNA:   3'- -UCGCGCCGCCGCCGUACUAAUAUGUG- -5'
13942 5' -54.6 NC_003521.1 + 156329 0.9 0.095073
Target:  5'- gGGCGCGGCGGCGGCGacGUUGUugGCa -3'
miRNA:   3'- -UCGCGCCGCCGCCGUacUAAUAugUG- -5'
13942 5' -54.6 NC_003521.1 + 31699 0.8 0.342073
Target:  5'- aAGUGgGGCGGCGGCAgca-UGUGCGCg -3'
miRNA:   3'- -UCGCgCCGCCGCCGUacuaAUAUGUG- -5'
13942 5' -54.6 NC_003521.1 + 207443 0.8 0.347416
Target:  5'- gAGCgGCGGCuGGCGGCGugugugagugacggUGAUUAUAUACa -3'
miRNA:   3'- -UCG-CGCCG-CCGCCGU--------------ACUAAUAUGUG- -5'
13942 5' -54.6 NC_003521.1 + 133056 0.79 0.389777
Target:  5'- cGGCGUcaGGCGGCGGCggGAUg--ACGCg -3'
miRNA:   3'- -UCGCG--CCGCCGCCGuaCUAauaUGUG- -5'
13942 5' -54.6 NC_003521.1 + 141361 0.79 0.389777
Target:  5'- gGGUGCGGCGGCGGUcgGug---ACGCg -3'
miRNA:   3'- -UCGCGCCGCCGCCGuaCuaauaUGUG- -5'
13942 5' -54.6 NC_003521.1 + 168544 0.79 0.406617
Target:  5'- cAGCGCGGCGGCGGCGcUGGcgGgcUGCGg -3'
miRNA:   3'- -UCGCGCCGCCGCCGU-ACUaaU--AUGUg -5'
13942 5' -54.6 NC_003521.1 + 111951 0.78 0.441629
Target:  5'- uGGCGCGGCGGCaGgAUGAgucuguUGCGCa -3'
miRNA:   3'- -UCGCGCCGCCGcCgUACUaau---AUGUG- -5'
13942 5' -54.6 NC_003521.1 + 77728 0.77 0.497168
Target:  5'- uAGCaGCGGCGGCGGCAgUGucacggGCACc -3'
miRNA:   3'- -UCG-CGCCGCCGCCGU-ACuaaua-UGUG- -5'
13942 5' -54.6 NC_003521.1 + 225575 0.77 0.51541
Target:  5'- cGGCGCucggguuGGCGGCGGCAUGuggcgaACGCg -3'
miRNA:   3'- -UCGCG-------CCGCCGCCGUACuaaua-UGUG- -5'
13942 5' -54.6 NC_003521.1 + 168435 0.76 0.545726
Target:  5'- gGGcCGCGGCGGCGggcgugaagaGCGUGAUgggGCGCu -3'
miRNA:   3'- -UC-GCGCCGCCGC----------CGUACUAauaUGUG- -5'
13942 5' -54.6 NC_003521.1 + 92018 0.76 0.545726
Target:  5'- aGGCGCGGCGGCGGCGgcg--GUGgGu -3'
miRNA:   3'- -UCGCGCCGCCGCCGUacuaaUAUgUg -5'
13942 5' -54.6 NC_003521.1 + 71638 0.76 0.555631
Target:  5'- cGGCGuCGGCGGCGGCG-GGUUcgucgccagGCGCg -3'
miRNA:   3'- -UCGC-GCCGCCGCCGUaCUAAua-------UGUG- -5'
13942 5' -54.6 NC_003521.1 + 54432 0.76 0.565588
Target:  5'- cGCGCGGCGGUGGCG-GAggcgGCGg -3'
miRNA:   3'- uCGCGCCGCCGCCGUaCUaauaUGUg -5'
13942 5' -54.6 NC_003521.1 + 43118 0.75 0.599744
Target:  5'- aAGCGCuGCGGCgagcgcucggcgcugGGCGUGGagGUGCACg -3'
miRNA:   3'- -UCGCGcCGCCG---------------CCGUACUaaUAUGUG- -5'
13942 5' -54.6 NC_003521.1 + 35751 0.75 0.605807
Target:  5'- cGGCGCcuccucGGCGGCGGCAgcUGcgccGUGCACg -3'
miRNA:   3'- -UCGCG------CCGCCGCCGU--ACuaa-UAUGUG- -5'
13942 5' -54.6 NC_003521.1 + 127157 0.75 0.605807
Target:  5'- aGGCGCGGUuguuggucauGGcCGGCAUGAg---GCACa -3'
miRNA:   3'- -UCGCGCCG----------CC-GCCGUACUaauaUGUG- -5'
13942 5' -54.6 NC_003521.1 + 71760 0.75 0.62606
Target:  5'- cAGCGUcGCGGcCGGCGUGGUUucggguUGCGCu -3'
miRNA:   3'- -UCGCGcCGCC-GCCGUACUAAu-----AUGUG- -5'
13942 5' -54.6 NC_003521.1 + 198427 0.75 0.62606
Target:  5'- uGGUGaCGGUGGCGGCcAUG-UUGUAUGCg -3'
miRNA:   3'- -UCGC-GCCGCCGCCG-UACuAAUAUGUG- -5'
13942 5' -54.6 NC_003521.1 + 227098 0.74 0.636196
Target:  5'- cGGCGCGGCGGCgGGCGagGAccccaugGCGCu -3'
miRNA:   3'- -UCGCGCCGCCG-CCGUa-CUaaua---UGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.