miRNA display CGI


Results 1 - 20 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13942 5' -54.6 NC_003521.1 + 96 0.7 0.858231
Target:  5'- gGGCGUGcagggaggccgaaGCGGCGGCcgGAgccGUGCAg -3'
miRNA:   3'- -UCGCGC-------------CGCCGCCGuaCUaa-UAUGUg -5'
13942 5' -54.6 NC_003521.1 + 3910 0.67 0.943929
Target:  5'- aGGCaGaCGGCGGCGGcCGUGGc---ACGCu -3'
miRNA:   3'- -UCG-C-GCCGCCGCC-GUACUaauaUGUG- -5'
13942 5' -54.6 NC_003521.1 + 6088 0.68 0.920986
Target:  5'- cGGUGCGGCGGCguuccgccacGGCuaucUGGUUGUgauaguucaggaacaGCACc -3'
miRNA:   3'- -UCGCGCCGCCG----------CCGu---ACUAAUA---------------UGUG- -5'
13942 5' -54.6 NC_003521.1 + 12375 1.1 0.004429
Target:  5'- gAGCGCGGCGGCGGCAUGAUUAUACACa -3'
miRNA:   3'- -UCGCGCCGCCGCCGUACUAAUAUGUG- -5'
13942 5' -54.6 NC_003521.1 + 17157 0.68 0.934562
Target:  5'- aGGCGCGGCcgagggggucgaGGCGGCcgcgGGgaacGCACg -3'
miRNA:   3'- -UCGCGCCG------------CCGCCGua--CUaauaUGUG- -5'
13942 5' -54.6 NC_003521.1 + 17661 0.66 0.975079
Target:  5'- gAGCGauGCGGCcuccagacugcgGGCGUGGUUcu-CGCg -3'
miRNA:   3'- -UCGCgcCGCCG------------CCGUACUAAuauGUG- -5'
13942 5' -54.6 NC_003521.1 + 19993 0.7 0.866503
Target:  5'- -uCGUGGCuGGCGGCGUGGauucACGCa -3'
miRNA:   3'- ucGCGCCG-CCGCCGUACUaauaUGUG- -5'
13942 5' -54.6 NC_003521.1 + 24176 0.69 0.900852
Target:  5'- gGGCGCGGUGGCagcggaGGCGgucGAccccAUACGCu -3'
miRNA:   3'- -UCGCGCCGCCG------CCGUa--CUaa--UAUGUG- -5'
13942 5' -54.6 NC_003521.1 + 27977 0.72 0.773982
Target:  5'- cGGCGCucacggccacGGCGGCaGCGUGAgcg-GCACc -3'
miRNA:   3'- -UCGCG----------CCGCCGcCGUACUaauaUGUG- -5'
13942 5' -54.6 NC_003521.1 + 29024 0.7 0.854391
Target:  5'- cAGCGCuagGGCGGUGGCGcggcccgcgcgcgucUGGUUgucggcGUGCGCc -3'
miRNA:   3'- -UCGCG---CCGCCGCCGU---------------ACUAA------UAUGUG- -5'
13942 5' -54.6 NC_003521.1 + 30896 0.7 0.866503
Target:  5'- aGGCGCgccgccGGUGGCGGUuUGAaUAUAgACg -3'
miRNA:   3'- -UCGCG------CCGCCGCCGuACUaAUAUgUG- -5'
13942 5' -54.6 NC_003521.1 + 31089 0.72 0.755221
Target:  5'- cAGCGacgaCGGCGGCGGCcg----GUACACg -3'
miRNA:   3'- -UCGC----GCCGCCGCCGuacuaaUAUGUG- -5'
13942 5' -54.6 NC_003521.1 + 31699 0.8 0.342073
Target:  5'- aAGUGgGGCGGCGGCAgca-UGUGCGCg -3'
miRNA:   3'- -UCGCgCCGCCGCCGUacuaAUAUGUG- -5'
13942 5' -54.6 NC_003521.1 + 34537 0.67 0.943929
Target:  5'- cGCGCGaGCGGCgacagaguucGGCcuuGUGGUcgggGUGCACc -3'
miRNA:   3'- uCGCGC-CGCCG----------CCG---UACUAa---UAUGUG- -5'
13942 5' -54.6 NC_003521.1 + 35314 0.68 0.92372
Target:  5'- uGUGUGGUGGCgccgcacGGCAUGAgcGUGCcCa -3'
miRNA:   3'- uCGCGCCGCCG-------CCGUACUaaUAUGuG- -5'
13942 5' -54.6 NC_003521.1 + 35751 0.75 0.605807
Target:  5'- cGGCGCcuccucGGCGGCGGCAgcUGcgccGUGCACg -3'
miRNA:   3'- -UCGCG------CCGCCGCCGU--ACuaa-UAUGUG- -5'
13942 5' -54.6 NC_003521.1 + 36076 0.7 0.862022
Target:  5'- cAGgGCGGCGGCGGCGccuccau-CACc -3'
miRNA:   3'- -UCgCGCCGCCGCCGUacuaauauGUG- -5'
13942 5' -54.6 NC_003521.1 + 36776 0.7 0.858993
Target:  5'- cGCGUGGCcuGGCgGGCGUGGagg-ACGCg -3'
miRNA:   3'- uCGCGCCG--CCG-CCGUACUaauaUGUG- -5'
13942 5' -54.6 NC_003521.1 + 40914 0.66 0.975079
Target:  5'- uAGCgagGCGGgGGCGGCccGGggGaGCGCc -3'
miRNA:   3'- -UCG---CGCCgCCGCCGuaCUaaUaUGUG- -5'
13942 5' -54.6 NC_003521.1 + 41637 0.67 0.952374
Target:  5'- gGGCGUGGCGcccGUGGuCAUGAUgaccugguucUACACc -3'
miRNA:   3'- -UCGCGCCGC---CGCC-GUACUAau--------AUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.