miRNA display CGI


Results 1 - 20 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13942 5' -54.6 NC_003521.1 + 166862 0.71 0.835282
Target:  5'- uGGCGCGGCGG-GcGCA-GGUcGUACAUc -3'
miRNA:   3'- -UCGCGCCGCCgC-CGUaCUAaUAUGUG- -5'
13942 5' -54.6 NC_003521.1 + 115436 0.72 0.773982
Target:  5'- cGGCGCGGgGGUGaCGgUGGUUGUGCGg -3'
miRNA:   3'- -UCGCGCCgCCGCcGU-ACUAAUAUGUg -5'
13942 5' -54.6 NC_003521.1 + 27977 0.72 0.773982
Target:  5'- cGGCGCucacggccacGGCGGCaGCGUGAgcg-GCACc -3'
miRNA:   3'- -UCGCG----------CCGCCGcCGUACUaauaUGUG- -5'
13942 5' -54.6 NC_003521.1 + 218035 0.72 0.78318
Target:  5'- uGgGCGGCGGCGGCGUccgcagguaGAUgagGUcCACc -3'
miRNA:   3'- uCgCGCCGCCGCCGUA---------CUAa--UAuGUG- -5'
13942 5' -54.6 NC_003521.1 + 102071 0.71 0.801169
Target:  5'- cGGUGuUGGCGGggaagGGCGUGAUgAUGCGCa -3'
miRNA:   3'- -UCGC-GCCGCCg----CCGUACUAaUAUGUG- -5'
13942 5' -54.6 NC_003521.1 + 75550 0.71 0.813408
Target:  5'- cGGCGcCGGCGGCGGCuacgcca-GCGCc -3'
miRNA:   3'- -UCGC-GCCGCCGCCGuacuaauaUGUG- -5'
13942 5' -54.6 NC_003521.1 + 78138 0.71 0.818558
Target:  5'- gGGCGCGuuaGCGGCGGCGgccgcGAacgagGCACg -3'
miRNA:   3'- -UCGCGC---CGCCGCCGUa----CUaaua-UGUG- -5'
13942 5' -54.6 NC_003521.1 + 101724 0.71 0.823648
Target:  5'- uGCGCGGCGGgGGCGaGAUggggaaggccgGCAg -3'
miRNA:   3'- uCGCGCCGCCgCCGUaCUAaua--------UGUg -5'
13942 5' -54.6 NC_003521.1 + 217406 0.71 0.827007
Target:  5'- aGGC-UGaGCGGCGGCAUGAagccgGUGCAg -3'
miRNA:   3'- -UCGcGC-CGCCGCCGUACUaa---UAUGUg -5'
13942 5' -54.6 NC_003521.1 + 31089 0.72 0.755221
Target:  5'- cAGCGacgaCGGCGGCGGCcg----GUACACg -3'
miRNA:   3'- -UCGC----GCCGCCGCCGuacuaaUAUGUG- -5'
13942 5' -54.6 NC_003521.1 + 131046 0.73 0.687674
Target:  5'- uGgGCGGCGGCGGCGggccucuggACGCg -3'
miRNA:   3'- uCgCGCCGCCGCCGUacuaaua--UGUG- -5'
13942 5' -54.6 NC_003521.1 + 198427 0.75 0.62606
Target:  5'- uGGUGaCGGUGGCGGCcAUG-UUGUAUGCg -3'
miRNA:   3'- -UCGC-GCCGCCGCCG-UACuAAUAUGUG- -5'
13942 5' -54.6 NC_003521.1 + 207443 0.8 0.347416
Target:  5'- gAGCgGCGGCuGGCGGCGugugugagugacggUGAUUAUAUACa -3'
miRNA:   3'- -UCG-CGCCG-CCGCCGU--------------ACUAAUAUGUG- -5'
13942 5' -54.6 NC_003521.1 + 141361 0.79 0.389777
Target:  5'- gGGUGCGGCGGCGGUcgGug---ACGCg -3'
miRNA:   3'- -UCGCGCCGCCGCCGuaCuaauaUGUG- -5'
13942 5' -54.6 NC_003521.1 + 168544 0.79 0.406617
Target:  5'- cAGCGCGGCGGCGGCGcUGGcgGgcUGCGg -3'
miRNA:   3'- -UCGCGCCGCCGCCGU-ACUaaU--AUGUg -5'
13942 5' -54.6 NC_003521.1 + 111951 0.78 0.441629
Target:  5'- uGGCGCGGCGGCaGgAUGAgucuguUGCGCa -3'
miRNA:   3'- -UCGCGCCGCCGcCgUACUaau---AUGUG- -5'
13942 5' -54.6 NC_003521.1 + 92018 0.76 0.545726
Target:  5'- aGGCGCGGCGGCGGCGgcg--GUGgGu -3'
miRNA:   3'- -UCGCGCCGCCGCCGUacuaaUAUgUg -5'
13942 5' -54.6 NC_003521.1 + 168435 0.76 0.545726
Target:  5'- gGGcCGCGGCGGCGggcgugaagaGCGUGAUgggGCGCu -3'
miRNA:   3'- -UC-GCGCCGCCGC----------CGUACUAauaUGUG- -5'
13942 5' -54.6 NC_003521.1 + 43118 0.75 0.599744
Target:  5'- aAGCGCuGCGGCgagcgcucggcgcugGGCGUGGagGUGCACg -3'
miRNA:   3'- -UCGCGcCGCCG---------------CCGUACUaaUAUGUG- -5'
13942 5' -54.6 NC_003521.1 + 127157 0.75 0.605807
Target:  5'- aGGCGCGGUuguuggucauGGcCGGCAUGAg---GCACa -3'
miRNA:   3'- -UCGCGCCG----------CC-GCCGUACUaauaUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.