miRNA display CGI


Results 21 - 40 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13942 5' -54.6 NC_003521.1 + 99190 0.66 0.975079
Target:  5'- gGGgGCugaaGGUGGCGGCG-GAggAUACGg -3'
miRNA:   3'- -UCgCG----CCGCCGCCGUaCUaaUAUGUg -5'
13942 5' -54.6 NC_003521.1 + 218629 0.66 0.975079
Target:  5'- cGCGCGGCGGUaagcggccacGGCcgGcg---GCGCc -3'
miRNA:   3'- uCGCGCCGCCG----------CCGuaCuaauaUGUG- -5'
13942 5' -54.6 NC_003521.1 + 40914 0.66 0.975079
Target:  5'- uAGCgagGCGGgGGCGGCccGGggGaGCGCc -3'
miRNA:   3'- -UCG---CGCCgCCGCCGuaCUaaUaUGUG- -5'
13942 5' -54.6 NC_003521.1 + 128239 0.66 0.97431
Target:  5'- uGGCGCGGUcGCGGUucagcagguaggccGUGGUgggcaGCGCg -3'
miRNA:   3'- -UCGCGCCGcCGCCG--------------UACUAaua--UGUG- -5'
13942 5' -54.6 NC_003521.1 + 104006 0.66 0.972449
Target:  5'- -aCGCGGCGcGaGGCGUGAUguuuCACc -3'
miRNA:   3'- ucGCGCCGC-CgCCGUACUAauauGUG- -5'
13942 5' -54.6 NC_003521.1 + 224016 0.66 0.972449
Target:  5'- cAGCgGCGGgccCGGCGGUcgGGgcggGCGCc -3'
miRNA:   3'- -UCG-CGCC---GCCGCCGuaCUaauaUGUG- -5'
13942 5' -54.6 NC_003521.1 + 85473 0.66 0.972449
Target:  5'- cGGCGCGGCGcCGG-GUGAcgcagugucGUACGCg -3'
miRNA:   3'- -UCGCGCCGCcGCCgUACUaa-------UAUGUG- -5'
13942 5' -54.6 NC_003521.1 + 192884 0.66 0.972449
Target:  5'- gAGCGCGaCGGCGGU-UGAcgAUcagcaGCGCg -3'
miRNA:   3'- -UCGCGCcGCCGCCGuACUaaUA-----UGUG- -5'
13942 5' -54.6 NC_003521.1 + 194698 0.66 0.972449
Target:  5'- gGGCGCGG-GGUG-CGUGGg---GCGCg -3'
miRNA:   3'- -UCGCGCCgCCGCcGUACUaauaUGUG- -5'
13942 5' -54.6 NC_003521.1 + 173068 0.66 0.972449
Target:  5'- uGCGUGaGCcucaccgccacgGGCGGCGUGGUccgcgGCGCc -3'
miRNA:   3'- uCGCGC-CG------------CCGCCGUACUAaua--UGUG- -5'
13942 5' -54.6 NC_003521.1 + 215828 0.66 0.972449
Target:  5'- cGGCGCGGUcccuggccugGGUGuaccaguuucGCGUGAccgUGUACACc -3'
miRNA:   3'- -UCGCGCCG----------CCGC----------CGUACUa--AUAUGUG- -5'
13942 5' -54.6 NC_003521.1 + 148772 0.66 0.972449
Target:  5'- aGGCGCaGCcGCGGCAUGGgccucCAUa -3'
miRNA:   3'- -UCGCGcCGcCGCCGUACUaauauGUG- -5'
13942 5' -54.6 NC_003521.1 + 227631 0.66 0.972175
Target:  5'- aAGCGCaGCGGCGGUA-------GCGCc -3'
miRNA:   3'- -UCGCGcCGCCGCCGUacuaauaUGUG- -5'
13942 5' -54.6 NC_003521.1 + 105938 0.66 0.971342
Target:  5'- cGUGUGGcCGGCGcGgAUGAUgaccgugugucggGUGCGCa -3'
miRNA:   3'- uCGCGCC-GCCGC-CgUACUAa------------UAUGUG- -5'
13942 5' -54.6 NC_003521.1 + 91288 0.66 0.970777
Target:  5'- uGCGCGGUcucgguuacuauacGCGcGUAUGcgUGUGCGCg -3'
miRNA:   3'- uCGCGCCGc-------------CGC-CGUACuaAUAUGUG- -5'
13942 5' -54.6 NC_003521.1 + 214822 0.66 0.969623
Target:  5'- gGGCGCGGCGaCGGCGguuccAUGCu- -3'
miRNA:   3'- -UCGCGCCGCcGCCGUacuaaUAUGug -5'
13942 5' -54.6 NC_003521.1 + 168577 0.66 0.969623
Target:  5'- aGGUgGCGGCugacccagcGGCGGCAUGGacAUGgGCu -3'
miRNA:   3'- -UCG-CGCCG---------CCGCCGUACUaaUAUgUG- -5'
13942 5' -54.6 NC_003521.1 + 149273 0.66 0.96933
Target:  5'- cGUGgGGuCGGUcuggaucuggacgGGCGUGAagGUGCGCg -3'
miRNA:   3'- uCGCgCC-GCCG-------------CCGUACUaaUAUGUG- -5'
13942 5' -54.6 NC_003521.1 + 221351 0.66 0.966597
Target:  5'- cAGCGUGGCGGUgacGGCGUcGGgcuucCACu -3'
miRNA:   3'- -UCGCGCCGCCG---CCGUA-CUaauauGUG- -5'
13942 5' -54.6 NC_003521.1 + 221632 0.66 0.966597
Target:  5'- aGGCGCGGCGGgacCAUGucgcUGCGCg -3'
miRNA:   3'- -UCGCGCCGCCgccGUACuaauAUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.