miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13943 3' -58.4 NC_003521.1 + 98964 0.66 0.861815
Target:  5'- -gGCGGCUagcgaCGGCGGCGccuuuaggaggcgucAGGG-GAGGUa -3'
miRNA:   3'- gaCGUCGA-----GCCGUCGC---------------UCUCaCUCCA- -5'
13943 3' -58.4 NC_003521.1 + 19427 0.68 0.784988
Target:  5'- aCUGCAGC-CGGCAGgaccgggaagaCGAaGAG-GAGGa -3'
miRNA:   3'- -GACGUCGaGCCGUC-----------GCU-CUCaCUCCa -5'
13943 3' -58.4 NC_003521.1 + 222098 0.67 0.811039
Target:  5'- cCUGCAGCgcCGGCAGCGucuc-GAGGc -3'
miRNA:   3'- -GACGUCGa-GCCGUCGCucucaCUCCa -5'
13943 3' -58.4 NC_003521.1 + 135780 0.67 0.811039
Target:  5'- -gGCGGCagUGGCGcuGCGGGAG-GAGGa -3'
miRNA:   3'- gaCGUCGa-GCCGU--CGCUCUCaCUCCa -5'
13943 3' -58.4 NC_003521.1 + 142932 0.67 0.827661
Target:  5'- uUGCAGCagCGGCGGUcAGGGUcagcGGGGg -3'
miRNA:   3'- gACGUCGa-GCCGUCGcUCUCA----CUCCa -5'
13943 3' -58.4 NC_003521.1 + 38137 0.67 0.843618
Target:  5'- aCUGCAGCUUuacCGGCGuGGGUG-GGUu -3'
miRNA:   3'- -GACGUCGAGcc-GUCGCuCUCACuCCA- -5'
13943 3' -58.4 NC_003521.1 + 186398 0.67 0.843618
Target:  5'- -aGCAGCggCGGCAGC---AGUGcAGGUa -3'
miRNA:   3'- gaCGUCGa-GCCGUCGcucUCAC-UCCA- -5'
13943 3' -58.4 NC_003521.1 + 191626 0.67 0.843618
Target:  5'- uUGCuguGCgCGGCgaagcgAGCGAGAGcuUGGGGUg -3'
miRNA:   3'- gACGu--CGaGCCG------UCGCUCUC--ACUCCA- -5'
13943 3' -58.4 NC_003521.1 + 238688 0.66 0.858113
Target:  5'- -aGCAGgUCGGCGGCcGugggacguugaccAGAG-GAGGUa -3'
miRNA:   3'- gaCGUCgAGCCGUCG-C-------------UCUCaCUCCA- -5'
13943 3' -58.4 NC_003521.1 + 115425 0.68 0.766966
Target:  5'- aCU-CAGCgccgCGGC-GCGGGGGUGAcGGUg -3'
miRNA:   3'- -GAcGUCGa---GCCGuCGCUCUCACU-CCA- -5'
13943 3' -58.4 NC_003521.1 + 72534 0.68 0.766966
Target:  5'- gCUGCGGaggCGGCGGCGAcGGUGucGUc -3'
miRNA:   3'- -GACGUCga-GCCGUCGCUcUCACucCA- -5'
13943 3' -58.4 NC_003521.1 + 59434 0.69 0.739113
Target:  5'- -aGCGGCgccgccgcCGGCAGCGAGcucGAGGUc -3'
miRNA:   3'- gaCGUCGa-------GCCGUCGCUCucaCUCCA- -5'
13943 3' -58.4 NC_003521.1 + 207447 0.72 0.5631
Target:  5'- -gGCGGCU-GGCGGCGuguguGAGUGAcGGUg -3'
miRNA:   3'- gaCGUCGAgCCGUCGCu----CUCACU-CCA- -5'
13943 3' -58.4 NC_003521.1 + 87063 0.71 0.602315
Target:  5'- -aGCAGCggguggaaggCGGCGGCGuAGGGguUGAGGUc -3'
miRNA:   3'- gaCGUCGa---------GCCGUCGC-UCUC--ACUCCA- -5'
13943 3' -58.4 NC_003521.1 + 92021 0.71 0.602315
Target:  5'- -cGCGGCggCGGCGGCGGuGGGUccgGGGGUc -3'
miRNA:   3'- gaCGUCGa-GCCGUCGCU-CUCA---CUCCA- -5'
13943 3' -58.4 NC_003521.1 + 213844 0.71 0.61515
Target:  5'- -aGCAGUUCGGCccagucucgcugcagGGCGuccauggcacccaAGAGUGAGGa -3'
miRNA:   3'- gaCGUCGAGCCG---------------UCGC-------------UCUCACUCCa -5'
13943 3' -58.4 NC_003521.1 + 70234 0.71 0.630974
Target:  5'- -cGCAGCagGGCuaggcagGGCGAGcuGGUGGGGUg -3'
miRNA:   3'- gaCGUCGagCCG-------UCGCUC--UCACUCCA- -5'
13943 3' -58.4 NC_003521.1 + 209564 0.71 0.641856
Target:  5'- -gGCGGCgaCGGUGGCGGGGGUccGGGGg -3'
miRNA:   3'- gaCGUCGa-GCCGUCGCUCUCA--CUCCa -5'
13943 3' -58.4 NC_003521.1 + 120936 0.7 0.661612
Target:  5'- -cGCGGCggCGGCuccGGCGAGGGgcaGGGGg -3'
miRNA:   3'- gaCGUCGa-GCCG---UCGCUCUCa--CUCCa -5'
13943 3' -58.4 NC_003521.1 + 91471 0.69 0.710477
Target:  5'- -cGCAGCUCGcggguGUAuGCGuGGGUGGGGg -3'
miRNA:   3'- gaCGUCGAGC-----CGU-CGCuCUCACUCCa -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.