Results 1 - 20 of 53 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13943 | 3' | -58.4 | NC_003521.1 | + | 98964 | 0.66 | 0.861815 |
Target: 5'- -gGCGGCUagcgaCGGCGGCGccuuuaggaggcgucAGGG-GAGGUa -3' miRNA: 3'- gaCGUCGA-----GCCGUCGC---------------UCUCaCUCCA- -5' |
|||||||
13943 | 3' | -58.4 | NC_003521.1 | + | 19427 | 0.68 | 0.784988 |
Target: 5'- aCUGCAGC-CGGCAGgaccgggaagaCGAaGAG-GAGGa -3' miRNA: 3'- -GACGUCGaGCCGUC-----------GCU-CUCaCUCCa -5' |
|||||||
13943 | 3' | -58.4 | NC_003521.1 | + | 222098 | 0.67 | 0.811039 |
Target: 5'- cCUGCAGCgcCGGCAGCGucuc-GAGGc -3' miRNA: 3'- -GACGUCGa-GCCGUCGCucucaCUCCa -5' |
|||||||
13943 | 3' | -58.4 | NC_003521.1 | + | 135780 | 0.67 | 0.811039 |
Target: 5'- -gGCGGCagUGGCGcuGCGGGAG-GAGGa -3' miRNA: 3'- gaCGUCGa-GCCGU--CGCUCUCaCUCCa -5' |
|||||||
13943 | 3' | -58.4 | NC_003521.1 | + | 142932 | 0.67 | 0.827661 |
Target: 5'- uUGCAGCagCGGCGGUcAGGGUcagcGGGGg -3' miRNA: 3'- gACGUCGa-GCCGUCGcUCUCA----CUCCa -5' |
|||||||
13943 | 3' | -58.4 | NC_003521.1 | + | 38137 | 0.67 | 0.843618 |
Target: 5'- aCUGCAGCUUuacCGGCGuGGGUG-GGUu -3' miRNA: 3'- -GACGUCGAGcc-GUCGCuCUCACuCCA- -5' |
|||||||
13943 | 3' | -58.4 | NC_003521.1 | + | 186398 | 0.67 | 0.843618 |
Target: 5'- -aGCAGCggCGGCAGC---AGUGcAGGUa -3' miRNA: 3'- gaCGUCGa-GCCGUCGcucUCAC-UCCA- -5' |
|||||||
13943 | 3' | -58.4 | NC_003521.1 | + | 191626 | 0.67 | 0.843618 |
Target: 5'- uUGCuguGCgCGGCgaagcgAGCGAGAGcuUGGGGUg -3' miRNA: 3'- gACGu--CGaGCCG------UCGCUCUC--ACUCCA- -5' |
|||||||
13943 | 3' | -58.4 | NC_003521.1 | + | 238688 | 0.66 | 0.858113 |
Target: 5'- -aGCAGgUCGGCGGCcGugggacguugaccAGAG-GAGGUa -3' miRNA: 3'- gaCGUCgAGCCGUCG-C-------------UCUCaCUCCA- -5' |
|||||||
13943 | 3' | -58.4 | NC_003521.1 | + | 115425 | 0.68 | 0.766966 |
Target: 5'- aCU-CAGCgccgCGGC-GCGGGGGUGAcGGUg -3' miRNA: 3'- -GAcGUCGa---GCCGuCGCUCUCACU-CCA- -5' |
|||||||
13943 | 3' | -58.4 | NC_003521.1 | + | 72534 | 0.68 | 0.766966 |
Target: 5'- gCUGCGGaggCGGCGGCGAcGGUGucGUc -3' miRNA: 3'- -GACGUCga-GCCGUCGCUcUCACucCA- -5' |
|||||||
13943 | 3' | -58.4 | NC_003521.1 | + | 59434 | 0.69 | 0.739113 |
Target: 5'- -aGCGGCgccgccgcCGGCAGCGAGcucGAGGUc -3' miRNA: 3'- gaCGUCGa-------GCCGUCGCUCucaCUCCA- -5' |
|||||||
13943 | 3' | -58.4 | NC_003521.1 | + | 207447 | 0.72 | 0.5631 |
Target: 5'- -gGCGGCU-GGCGGCGuguguGAGUGAcGGUg -3' miRNA: 3'- gaCGUCGAgCCGUCGCu----CUCACU-CCA- -5' |
|||||||
13943 | 3' | -58.4 | NC_003521.1 | + | 87063 | 0.71 | 0.602315 |
Target: 5'- -aGCAGCggguggaaggCGGCGGCGuAGGGguUGAGGUc -3' miRNA: 3'- gaCGUCGa---------GCCGUCGC-UCUC--ACUCCA- -5' |
|||||||
13943 | 3' | -58.4 | NC_003521.1 | + | 92021 | 0.71 | 0.602315 |
Target: 5'- -cGCGGCggCGGCGGCGGuGGGUccgGGGGUc -3' miRNA: 3'- gaCGUCGa-GCCGUCGCU-CUCA---CUCCA- -5' |
|||||||
13943 | 3' | -58.4 | NC_003521.1 | + | 213844 | 0.71 | 0.61515 |
Target: 5'- -aGCAGUUCGGCccagucucgcugcagGGCGuccauggcacccaAGAGUGAGGa -3' miRNA: 3'- gaCGUCGAGCCG---------------UCGC-------------UCUCACUCCa -5' |
|||||||
13943 | 3' | -58.4 | NC_003521.1 | + | 70234 | 0.71 | 0.630974 |
Target: 5'- -cGCAGCagGGCuaggcagGGCGAGcuGGUGGGGUg -3' miRNA: 3'- gaCGUCGagCCG-------UCGCUC--UCACUCCA- -5' |
|||||||
13943 | 3' | -58.4 | NC_003521.1 | + | 209564 | 0.71 | 0.641856 |
Target: 5'- -gGCGGCgaCGGUGGCGGGGGUccGGGGg -3' miRNA: 3'- gaCGUCGa-GCCGUCGCUCUCA--CUCCa -5' |
|||||||
13943 | 3' | -58.4 | NC_003521.1 | + | 120936 | 0.7 | 0.661612 |
Target: 5'- -cGCGGCggCGGCuccGGCGAGGGgcaGGGGg -3' miRNA: 3'- gaCGUCGa-GCCG---UCGCUCUCa--CUCCa -5' |
|||||||
13943 | 3' | -58.4 | NC_003521.1 | + | 91471 | 0.69 | 0.710477 |
Target: 5'- -cGCAGCUCGcggguGUAuGCGuGGGUGGGGg -3' miRNA: 3'- gaCGUCGAGC-----CGU-CGCuCUCACUCCa -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home