Results 21 - 40 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13943 | 3' | -58.4 | NC_003521.1 | + | 233116 | 0.67 | 0.842054 |
Target: 5'- -cGCGGCcgggaggguccgCGGCGGCGGG-G-GAGGUa -3' miRNA: 3'- gaCGUCGa-----------GCCGUCGCUCuCaCUCCA- -5' |
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13943 | 3' | -58.4 | NC_003521.1 | + | 75113 | 0.67 | 0.835726 |
Target: 5'- gUGCAGgUCGuGCAGCGuGAGgcgcGGGa -3' miRNA: 3'- gACGUCgAGC-CGUCGCuCUCac--UCCa -5' |
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13943 | 3' | -58.4 | NC_003521.1 | + | 142932 | 0.67 | 0.827661 |
Target: 5'- uUGCAGCagCGGCGGUcAGGGUcagcGGGGg -3' miRNA: 3'- gACGUCGa-GCCGUCGcUCUCA----CUCCa -5' |
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13943 | 3' | -58.4 | NC_003521.1 | + | 41705 | 0.67 | 0.827661 |
Target: 5'- gUGUAGa-CGGCGGCGGGGGUcGAGa- -3' miRNA: 3'- gACGUCgaGCCGUCGCUCUCA-CUCca -5' |
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13943 | 3' | -58.4 | NC_003521.1 | + | 116621 | 0.67 | 0.818597 |
Target: 5'- -aGCAGCUCGGCcucgucgGGCGGcuggucguagcGcGUGAGGa -3' miRNA: 3'- gaCGUCGAGCCG-------UCGCU-----------CuCACUCCa -5' |
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13943 | 3' | -58.4 | NC_003521.1 | + | 222098 | 0.67 | 0.811039 |
Target: 5'- cCUGCAGCgcCGGCAGCGucuc-GAGGc -3' miRNA: 3'- -GACGUCGa-GCCGUCGCucucaCUCCa -5' |
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13943 | 3' | -58.4 | NC_003521.1 | + | 135780 | 0.67 | 0.811039 |
Target: 5'- -gGCGGCagUGGCGcuGCGGGAG-GAGGa -3' miRNA: 3'- gaCGUCGa-GCCGU--CGCUCUCaCUCCa -5' |
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13943 | 3' | -58.4 | NC_003521.1 | + | 155569 | 0.67 | 0.811039 |
Target: 5'- gCUGCAcCUCGGCGuGCGAGAG-GAa-- -3' miRNA: 3'- -GACGUcGAGCCGU-CGCUCUCaCUcca -5' |
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13943 | 3' | -58.4 | NC_003521.1 | + | 36384 | 0.67 | 0.80764 |
Target: 5'- -gGCAGCgaggugaccaccaCGGCGGgGAGGGUGgcgaGGGUg -3' miRNA: 3'- gaCGUCGa------------GCCGUCgCUCUCAC----UCCA- -5' |
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13943 | 3' | -58.4 | NC_003521.1 | + | 137436 | 0.68 | 0.802497 |
Target: 5'- -gGCAGCUCGGCGGCGGccGcUGcGGc -3' miRNA: 3'- gaCGUCGAGCCGUCGCUcuC-ACuCCa -5' |
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13943 | 3' | -58.4 | NC_003521.1 | + | 156260 | 0.68 | 0.792934 |
Target: 5'- -gGCAGCUCGcGCAGCGccuccucGGuGGUGuAGGg -3' miRNA: 3'- gaCGUCGAGC-CGUCGC-------UC-UCAC-UCCa -5' |
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13943 | 3' | -58.4 | NC_003521.1 | + | 19427 | 0.68 | 0.784988 |
Target: 5'- aCUGCAGC-CGGCAGgaccgggaagaCGAaGAG-GAGGa -3' miRNA: 3'- -GACGUCGaGCCGUC-----------GCU-CUCaCUCCa -5' |
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13943 | 3' | -58.4 | NC_003521.1 | + | 115425 | 0.68 | 0.766966 |
Target: 5'- aCU-CAGCgccgCGGC-GCGGGGGUGAcGGUg -3' miRNA: 3'- -GAcGUCGa---GCCGuCGCUCUCACU-CCA- -5' |
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13943 | 3' | -58.4 | NC_003521.1 | + | 72534 | 0.68 | 0.766966 |
Target: 5'- gCUGCGGaggCGGCGGCGAcGGUGucGUc -3' miRNA: 3'- -GACGUCga-GCCGUCGCUcUCACucCA- -5' |
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13943 | 3' | -58.4 | NC_003521.1 | + | 72779 | 0.69 | 0.757783 |
Target: 5'- -cGCAGCUCGG-AG-GAGAagacccgggucGUGAGGUa -3' miRNA: 3'- gaCGUCGAGCCgUCgCUCU-----------CACUCCA- -5' |
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13943 | 3' | -58.4 | NC_003521.1 | + | 85909 | 0.69 | 0.757783 |
Target: 5'- -gGCGGCcgCGGCuGcCGGGGGgGAGGUg -3' miRNA: 3'- gaCGUCGa-GCCGuC-GCUCUCaCUCCA- -5' |
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13943 | 3' | -58.4 | NC_003521.1 | + | 59434 | 0.69 | 0.739113 |
Target: 5'- -aGCGGCgccgccgcCGGCAGCGAGcucGAGGUc -3' miRNA: 3'- gaCGUCGa-------GCCGUCGCUCucaCUCCA- -5' |
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13943 | 3' | -58.4 | NC_003521.1 | + | 91471 | 0.69 | 0.710477 |
Target: 5'- -cGCAGCUCGcggguGUAuGCGuGGGUGGGGg -3' miRNA: 3'- gaCGUCGAGC-----CGU-CGCuCUCACUCCa -5' |
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13943 | 3' | -58.4 | NC_003521.1 | + | 69485 | 0.69 | 0.710477 |
Target: 5'- -aGCGGaacccgagCGGCGGCGGGAGUGccgccgacgucGGGUa -3' miRNA: 3'- gaCGUCga------GCCGUCGCUCUCAC-----------UCCA- -5' |
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13943 | 3' | -58.4 | NC_003521.1 | + | 117401 | 0.7 | 0.68128 |
Target: 5'- gCUGCGGCgUGGCGGUGgaAGAG-GAGGc -3' miRNA: 3'- -GACGUCGaGCCGUCGC--UCUCaCUCCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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