Results 21 - 40 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13943 | 3' | -58.4 | NC_003521.1 | + | 87063 | 0.71 | 0.602315 |
Target: 5'- -aGCAGCggguggaaggCGGCGGCGuAGGGguUGAGGUc -3' miRNA: 3'- gaCGUCGa---------GCCGUCGC-UCUC--ACUCCA- -5' |
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13943 | 3' | -58.4 | NC_003521.1 | + | 91471 | 0.69 | 0.710477 |
Target: 5'- -cGCAGCUCGcggguGUAuGCGuGGGUGGGGg -3' miRNA: 3'- gaCGUCGAGC-----CGU-CGCuCUCACUCCa -5' |
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13943 | 3' | -58.4 | NC_003521.1 | + | 92021 | 0.71 | 0.602315 |
Target: 5'- -cGCGGCggCGGCGGCGGuGGGUccgGGGGUc -3' miRNA: 3'- gaCGUCGa-GCCGUCGCU-CUCA---CUCCA- -5' |
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13943 | 3' | -58.4 | NC_003521.1 | + | 92787 | 0.77 | 0.330077 |
Target: 5'- gCUGaGGCUCGGgacuagcaAGCGGGGGUGAGGUg -3' miRNA: 3'- -GACgUCGAGCCg-------UCGCUCUCACUCCA- -5' |
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13943 | 3' | -58.4 | NC_003521.1 | + | 98964 | 0.66 | 0.861815 |
Target: 5'- -gGCGGCUagcgaCGGCGGCGccuuuaggaggcgucAGGG-GAGGUa -3' miRNA: 3'- gaCGUCGA-----GCCGUCGC---------------UCUCaCUCCA- -5' |
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13943 | 3' | -58.4 | NC_003521.1 | + | 103057 | 0.66 | 0.886999 |
Target: 5'- gCUGCAGacagggCGGguGCGcGGGcGAGGg -3' miRNA: 3'- -GACGUCga----GCCguCGCuCUCaCUCCa -5' |
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13943 | 3' | -58.4 | NC_003521.1 | + | 105342 | 0.67 | 0.843618 |
Target: 5'- aCUGCGGUgguggCGGCGGUGGGAucgccccUGGGGc -3' miRNA: 3'- -GACGUCGa----GCCGUCGCUCUc------ACUCCa -5' |
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13943 | 3' | -58.4 | NC_003521.1 | + | 115425 | 0.68 | 0.766966 |
Target: 5'- aCU-CAGCgccgCGGC-GCGGGGGUGAcGGUg -3' miRNA: 3'- -GAcGUCGa---GCCGuCGCUCUCACU-CCA- -5' |
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13943 | 3' | -58.4 | NC_003521.1 | + | 116179 | 0.66 | 0.886999 |
Target: 5'- gCUGCuGCUCcuguGGCcGCgGAGAG-GAGGg -3' miRNA: 3'- -GACGuCGAG----CCGuCG-CUCUCaCUCCa -5' |
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13943 | 3' | -58.4 | NC_003521.1 | + | 116621 | 0.67 | 0.818597 |
Target: 5'- -aGCAGCUCGGCcucgucgGGCGGcuggucguagcGcGUGAGGa -3' miRNA: 3'- gaCGUCGAGCCG-------UCGCU-----------CuCACUCCa -5' |
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13943 | 3' | -58.4 | NC_003521.1 | + | 117401 | 0.7 | 0.68128 |
Target: 5'- gCUGCGGCgUGGCGGUGgaAGAG-GAGGc -3' miRNA: 3'- -GACGUCGaGCCGUCGC--UCUCaCUCCa -5' |
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13943 | 3' | -58.4 | NC_003521.1 | + | 118459 | 0.67 | 0.845951 |
Target: 5'- -cGCGcGCUCGGCggccccgacuuugccGGCGGGcgucgucugcggcGGUGGGGUg -3' miRNA: 3'- gaCGU-CGAGCCG---------------UCGCUC-------------UCACUCCA- -5' |
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13943 | 3' | -58.4 | NC_003521.1 | + | 120936 | 0.7 | 0.661612 |
Target: 5'- -cGCGGCggCGGCuccGGCGAGGGgcaGGGGg -3' miRNA: 3'- gaCGUCGa-GCCG---UCGCUCUCa--CUCCa -5' |
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13943 | 3' | -58.4 | NC_003521.1 | + | 135780 | 0.67 | 0.811039 |
Target: 5'- -gGCGGCagUGGCGcuGCGGGAG-GAGGa -3' miRNA: 3'- gaCGUCGa-GCCGU--CGCUCUCaCUCCa -5' |
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13943 | 3' | -58.4 | NC_003521.1 | + | 137436 | 0.68 | 0.802497 |
Target: 5'- -gGCAGCUCGGCGGCGGccGcUGcGGc -3' miRNA: 3'- gaCGUCGAGCCGUCGCUcuC-ACuCCa -5' |
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13943 | 3' | -58.4 | NC_003521.1 | + | 142932 | 0.67 | 0.827661 |
Target: 5'- uUGCAGCagCGGCGGUcAGGGUcagcGGGGg -3' miRNA: 3'- gACGUCGa-GCCGUCGcUCUCA----CUCCa -5' |
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13943 | 3' | -58.4 | NC_003521.1 | + | 154663 | 0.66 | 0.873332 |
Target: 5'- -gGCcgaGGC-CGGCAGCGAGAcgcugGAGGc -3' miRNA: 3'- gaCG---UCGaGCCGUCGCUCUca---CUCCa -5' |
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13943 | 3' | -58.4 | NC_003521.1 | + | 155569 | 0.67 | 0.811039 |
Target: 5'- gCUGCAcCUCGGCGuGCGAGAG-GAa-- -3' miRNA: 3'- -GACGUcGAGCCGU-CGCUCUCaCUcca -5' |
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13943 | 3' | -58.4 | NC_003521.1 | + | 156260 | 0.68 | 0.792934 |
Target: 5'- -gGCAGCUCGcGCAGCGccuccucGGuGGUGuAGGg -3' miRNA: 3'- gaCGUCGAGC-CGUCGC-------UC-UCAC-UCCa -5' |
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13943 | 3' | -58.4 | NC_003521.1 | + | 164732 | 0.71 | 0.592464 |
Target: 5'- gCUGCGGCggCGGCAGCGGcGAccGUGAcGGc -3' miRNA: 3'- -GACGUCGa-GCCGUCGCU-CU--CACU-CCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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