Results 41 - 53 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13943 | 3' | -58.4 | NC_003521.1 | + | 155569 | 0.67 | 0.811039 |
Target: 5'- gCUGCAcCUCGGCGuGCGAGAG-GAa-- -3' miRNA: 3'- -GACGUcGAGCCGU-CGCUCUCaCUcca -5' |
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13943 | 3' | -58.4 | NC_003521.1 | + | 92787 | 0.77 | 0.330077 |
Target: 5'- gCUGaGGCUCGGgacuagcaAGCGGGGGUGAGGUg -3' miRNA: 3'- -GACgUCGAGCCg-------UCGCUCUCACUCCA- -5' |
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13943 | 3' | -58.4 | NC_003521.1 | + | 173127 | 0.76 | 0.37467 |
Target: 5'- cCUGCAGCUCGGCcucagacuccgagAGCGAGuccGAGGa -3' miRNA: 3'- -GACGUCGAGCCG-------------UCGCUCucaCUCCa -5' |
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13943 | 3' | -58.4 | NC_003521.1 | + | 164732 | 0.71 | 0.592464 |
Target: 5'- gCUGCGGCggCGGCAGCGGcGAccGUGAcGGc -3' miRNA: 3'- -GACGUCGa-GCCGUCGCU-CU--CACU-CCa -5' |
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13943 | 3' | -58.4 | NC_003521.1 | + | 43817 | 0.71 | 0.612186 |
Target: 5'- -cGCGGCgcCGGCGGCGGGgAGcggGAGGg -3' miRNA: 3'- gaCGUCGa-GCCGUCGCUC-UCa--CUCCa -5' |
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13943 | 3' | -58.4 | NC_003521.1 | + | 117401 | 0.7 | 0.68128 |
Target: 5'- gCUGCGGCgUGGCGGUGgaAGAG-GAGGc -3' miRNA: 3'- -GACGUCGaGCCGUCGC--UCUCaCUCCa -5' |
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13943 | 3' | -58.4 | NC_003521.1 | + | 69485 | 0.69 | 0.710477 |
Target: 5'- -aGCGGaacccgagCGGCGGCGGGAGUGccgccgacgucGGGUa -3' miRNA: 3'- gaCGUCga------GCCGUCGCUCUCAC-----------UCCA- -5' |
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13943 | 3' | -58.4 | NC_003521.1 | + | 72779 | 0.69 | 0.757783 |
Target: 5'- -cGCAGCUCGG-AG-GAGAagacccgggucGUGAGGUa -3' miRNA: 3'- gaCGUCGAGCCgUCgCUCU-----------CACUCCA- -5' |
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13943 | 3' | -58.4 | NC_003521.1 | + | 85909 | 0.69 | 0.757783 |
Target: 5'- -gGCGGCcgCGGCuGcCGGGGGgGAGGUg -3' miRNA: 3'- gaCGUCGa-GCCGuC-GCUCUCaCUCCA- -5' |
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13943 | 3' | -58.4 | NC_003521.1 | + | 156260 | 0.68 | 0.792934 |
Target: 5'- -gGCAGCUCGcGCAGCGccuccucGGuGGUGuAGGg -3' miRNA: 3'- gaCGUCGAGC-CGUCGC-------UC-UCAC-UCCa -5' |
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13943 | 3' | -58.4 | NC_003521.1 | + | 137436 | 0.68 | 0.802497 |
Target: 5'- -gGCAGCUCGGCGGCGGccGcUGcGGc -3' miRNA: 3'- gaCGUCGAGCCGUCGCUcuC-ACuCCa -5' |
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13943 | 3' | -58.4 | NC_003521.1 | + | 36384 | 0.67 | 0.80764 |
Target: 5'- -gGCAGCgaggugaccaccaCGGCGGgGAGGGUGgcgaGGGUg -3' miRNA: 3'- gaCGUCGa------------GCCGUCgCUCUCAC----UCCA- -5' |
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13943 | 3' | -58.4 | NC_003521.1 | + | 12514 | 1.07 | 0.003425 |
Target: 5'- aCUGCAGCUCGGCAGCGAGAGUGAGGUc -3' miRNA: 3'- -GACGUCGAGCCGUCGCUCUCACUCCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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