miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13944 3' -57.1 NC_003521.1 + 78736 0.66 0.94307
Target:  5'- aGCGgcCAGGaGUUGUCGuCGGGCAcggccacgaGGUCc -3'
miRNA:   3'- -CGCa-GUCCaCAACGGC-GCUCGU---------CCAG- -5'
13944 3' -57.1 NC_003521.1 + 128372 0.66 0.94307
Target:  5'- -gGUCAGGUccacGUUG-CGCuccAGCGGGUCc -3'
miRNA:   3'- cgCAGUCCA----CAACgGCGc--UCGUCCAG- -5'
13944 3' -57.1 NC_003521.1 + 207299 0.66 0.94263
Target:  5'- aCG-CAGGU-UUGCCGCcGAugaaacagggauaGCAGGUCu -3'
miRNA:   3'- cGCaGUCCAcAACGGCG-CU-------------CGUCCAG- -5'
13944 3' -57.1 NC_003521.1 + 119610 0.66 0.941744
Target:  5'- aGCGUCucgugcugcAGGUGgacguuuacccacugGCCGCGGGCGuccGUCu -3'
miRNA:   3'- -CGCAG---------UCCACaa-------------CGGCGCUCGUc--CAG- -5'
13944 3' -57.1 NC_003521.1 + 55370 0.66 0.938574
Target:  5'- cGCGUCucgccGGGUGcggaggUGaUCGcCGAGCGGGUg -3'
miRNA:   3'- -CGCAG-----UCCACa-----AC-GGC-GCUCGUCCAg -5'
13944 3' -57.1 NC_003521.1 + 57139 0.66 0.938574
Target:  5'- aGCGaUAGGUcucGUcgGCCacGCGcGGCAGGUCg -3'
miRNA:   3'- -CGCaGUCCA---CAa-CGG--CGC-UCGUCCAG- -5'
13944 3' -57.1 NC_003521.1 + 123474 0.66 0.938574
Target:  5'- gGCGUCAGcuccGUGUccGUCGCcGGCGGGg- -3'
miRNA:   3'- -CGCAGUC----CACAa-CGGCGcUCGUCCag -5'
13944 3' -57.1 NC_003521.1 + 32253 0.66 0.938113
Target:  5'- aGCGUCAGGccccggaUGUcauacuUGCCGUGAGCc-GUg -3'
miRNA:   3'- -CGCAGUCC-------ACA------ACGGCGCUCGucCAg -5'
13944 3' -57.1 NC_003521.1 + 128320 0.66 0.938113
Target:  5'- cCGU--GGUGUaGCCGCGguccucgGGCAGGUa -3'
miRNA:   3'- cGCAguCCACAaCGGCGC-------UCGUCCAg -5'
13944 3' -57.1 NC_003521.1 + 141976 0.66 0.933858
Target:  5'- aGCGUCAGGa---GCUGC-AGCGGGa- -3'
miRNA:   3'- -CGCAGUCCacaaCGGCGcUCGUCCag -5'
13944 3' -57.1 NC_003521.1 + 61621 0.66 0.928919
Target:  5'- uUG-CAGGaagcggGCCGUGGGCAGGUg -3'
miRNA:   3'- cGCaGUCCacaa--CGGCGCUCGUCCAg -5'
13944 3' -57.1 NC_003521.1 + 18543 0.66 0.928919
Target:  5'- uGCGgugCGGcccucccGUCGCGGGCAGGUCc -3'
miRNA:   3'- -CGCa--GUCcacaa--CGGCGCUCGUCCAG- -5'
13944 3' -57.1 NC_003521.1 + 60869 0.66 0.928919
Target:  5'- gGCGUU-GGUGgUGCCGCGcguGUGGGcCu -3'
miRNA:   3'- -CGCAGuCCACaACGGCGCu--CGUCCaG- -5'
13944 3' -57.1 NC_003521.1 + 67565 0.66 0.923756
Target:  5'- uGUGUCAGGcGgcggGCCccGCGGGcCAGaGUCg -3'
miRNA:   3'- -CGCAGUCCaCaa--CGG--CGCUC-GUC-CAG- -5'
13944 3' -57.1 NC_003521.1 + 130579 0.66 0.918371
Target:  5'- aGCGcCAGGUGcUGUacuucaaGCu-GCAGGUCa -3'
miRNA:   3'- -CGCaGUCCACaACGg------CGcuCGUCCAG- -5'
13944 3' -57.1 NC_003521.1 + 123291 0.66 0.918371
Target:  5'- aGCGUCAGGU----CCGCGGGCgacucGGcGUCc -3'
miRNA:   3'- -CGCAGUCCAcaacGGCGCUCG-----UC-CAG- -5'
13944 3' -57.1 NC_003521.1 + 103048 0.66 0.918371
Target:  5'- uGCG-CAGGUGcUGCaGacaGGGCGGGUg -3'
miRNA:   3'- -CGCaGUCCACaACGgCg--CUCGUCCAg -5'
13944 3' -57.1 NC_003521.1 + 121293 0.66 0.918371
Target:  5'- gGCGaCgAGGUcGgcGCCGcCGAGgAGGUCu -3'
miRNA:   3'- -CGCaG-UCCA-CaaCGGC-GCUCgUCCAG- -5'
13944 3' -57.1 NC_003521.1 + 213611 0.67 0.912764
Target:  5'- gGCuGUUGGGguggcgGUcGCCGCGcAGCAGGa- -3'
miRNA:   3'- -CG-CAGUCCa-----CAaCGGCGC-UCGUCCag -5'
13944 3' -57.1 NC_003521.1 + 90914 0.67 0.912764
Target:  5'- gGCGUC-GGUGUUGuuGCcGGGCAa--- -3'
miRNA:   3'- -CGCAGuCCACAACggCG-CUCGUccag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.