miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13944 3' -57.1 NC_003521.1 + 239566 0.72 0.673335
Target:  5'- aGgGUCAGcGUGUUG-CGCu-GCAGGUCg -3'
miRNA:   3'- -CgCAGUC-CACAACgGCGcuCGUCCAG- -5'
13944 3' -57.1 NC_003521.1 + 228105 0.69 0.804052
Target:  5'- uCGUcCAGGcUGUUGCgCGCGuAGCAGccGUCg -3'
miRNA:   3'- cGCA-GUCC-ACAACG-GCGC-UCGUC--CAG- -5'
13944 3' -57.1 NC_003521.1 + 218740 0.69 0.812561
Target:  5'- gGCGUCGGGacgGUcccccaUGCUGCGuucGCGGGcUCg -3'
miRNA:   3'- -CGCAGUCCa--CA------ACGGCGCu--CGUCC-AG- -5'
13944 3' -57.1 NC_003521.1 + 216809 0.7 0.776784
Target:  5'- cGCGUCAGGUuacgccgGaUGgCGCGcAGgAGGUCg -3'
miRNA:   3'- -CGCAGUCCA-------CaACgGCGC-UCgUCCAG- -5'
13944 3' -57.1 NC_003521.1 + 213611 0.67 0.912764
Target:  5'- gGCuGUUGGGguggcgGUcGCCGCGcAGCAGGa- -3'
miRNA:   3'- -CG-CAGUCCa-----CAaCGGCGC-UCGUCCag -5'
13944 3' -57.1 NC_003521.1 + 207299 0.66 0.94263
Target:  5'- aCG-CAGGU-UUGCCGCcGAugaaacagggauaGCAGGUCu -3'
miRNA:   3'- cGCaGUCCAcAACGGCG-CU-------------CGUCCAG- -5'
13944 3' -57.1 NC_003521.1 + 206625 0.71 0.712288
Target:  5'- -gGUCGGGUGgacgUGUCGCGAcauggacguGCAGGg- -3'
miRNA:   3'- cgCAGUCCACa---ACGGCGCU---------CGUCCag -5'
13944 3' -57.1 NC_003521.1 + 201749 0.72 0.673335
Target:  5'- aGgGUCAGcGUGUUG-CGCu-GCAGGUCg -3'
miRNA:   3'- -CgCAGUC-CACAACgGCGcuCGUCCAG- -5'
13944 3' -57.1 NC_003521.1 + 196885 0.68 0.860161
Target:  5'- cCG-CGGGUGagGCCGgGgcggaaGGCGGGUCg -3'
miRNA:   3'- cGCaGUCCACaaCGGCgC------UCGUCCAG- -5'
13944 3' -57.1 NC_003521.1 + 196829 0.67 0.894622
Target:  5'- gGCGUCGGGgagGUcaUGCUGUGGGUcGGc- -3'
miRNA:   3'- -CGCAGUCCa--CA--ACGGCGCUCGuCCag -5'
13944 3' -57.1 NC_003521.1 + 187928 0.74 0.526513
Target:  5'- aCGUCGGGgacgGCgGCGAGgAGGUCg -3'
miRNA:   3'- cGCAGUCCacaaCGgCGCUCgUCCAG- -5'
13944 3' -57.1 NC_003521.1 + 187690 0.69 0.820917
Target:  5'- cGCGgcgagCAGGgGaUGgCGCGucGGCAGGUCg -3'
miRNA:   3'- -CGCa----GUCCaCaACgGCGC--UCGUCCAG- -5'
13944 3' -57.1 NC_003521.1 + 184636 0.67 0.888143
Target:  5'- aGCGaCAGGUGUcagaacuacUGuCCGCuGAGCgcgcugauuuacAGGUCg -3'
miRNA:   3'- -CGCaGUCCACA---------AC-GGCG-CUCG------------UCCAG- -5'
13944 3' -57.1 NC_003521.1 + 179833 0.69 0.795397
Target:  5'- aGCGUCGcGGUGUgggGCCaGUGucGCAGGg- -3'
miRNA:   3'- -CGCAGU-CCACAa--CGG-CGCu-CGUCCag -5'
13944 3' -57.1 NC_003521.1 + 166404 0.7 0.76864
Target:  5'- uGCGUCAaGUcGUaGCCGCGGcaCAGGUCg -3'
miRNA:   3'- -CGCAGUcCA-CAaCGGCGCUc-GUCCAG- -5'
13944 3' -57.1 NC_003521.1 + 162506 0.68 0.857935
Target:  5'- uGCGUCgugacguuguuuguGGGUGUUGCUagGCGGGUAGa-- -3'
miRNA:   3'- -CGCAG--------------UCCACAACGG--CGCUCGUCcag -5'
13944 3' -57.1 NC_003521.1 + 156796 0.67 0.894622
Target:  5'- uUGUCacAGGUGUaGCCuucgaGCGuGUAGGUCu -3'
miRNA:   3'- cGCAG--UCCACAaCGG-----CGCuCGUCCAG- -5'
13944 3' -57.1 NC_003521.1 + 146782 0.67 0.881453
Target:  5'- ---cCGGGUGgaGCCGCcguuucuGCGGGUCg -3'
miRNA:   3'- cgcaGUCCACaaCGGCGcu-----CGUCCAG- -5'
13944 3' -57.1 NC_003521.1 + 141976 0.66 0.933858
Target:  5'- aGCGUCAGGa---GCUGC-AGCGGGa- -3'
miRNA:   3'- -CGCAGUCCacaaCGGCGcUCGUCCag -5'
13944 3' -57.1 NC_003521.1 + 137962 0.67 0.881453
Target:  5'- cGCGUguGGUaugccgacgugGUgcgcugUGuCCGCGcGCAGGUCg -3'
miRNA:   3'- -CGCAguCCA-----------CA------AC-GGCGCuCGUCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.