Results 41 - 60 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13944 | 3' | -57.1 | NC_003521.1 | + | 34427 | 0.69 | 0.834752 |
Target: 5'- gGCGUCGcGGUGcgacuccacguaggcGCUGCGGGCcuggGGGUCg -3' miRNA: 3'- -CGCAGU-CCACaa-------------CGGCGCUCG----UCCAG- -5' |
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13944 | 3' | -57.1 | NC_003521.1 | + | 187690 | 0.69 | 0.820917 |
Target: 5'- cGCGgcgagCAGGgGaUGgCGCGucGGCAGGUCg -3' miRNA: 3'- -CGCa----GUCCaCaACgGCGC--UCGUCCAG- -5' |
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13944 | 3' | -57.1 | NC_003521.1 | + | 218740 | 0.69 | 0.812561 |
Target: 5'- gGCGUCGGGacgGUcccccaUGCUGCGuucGCGGGcUCg -3' miRNA: 3'- -CGCAGUCCa--CA------ACGGCGCu--CGUCC-AG- -5' |
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13944 | 3' | -57.1 | NC_003521.1 | + | 62301 | 0.69 | 0.811717 |
Target: 5'- gGCGUCcgcgggacgggcgAGGca-UGCCcgGCGGGCGGGUCg -3' miRNA: 3'- -CGCAG-------------UCCacaACGG--CGCUCGUCCAG- -5' |
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13944 | 3' | -57.1 | NC_003521.1 | + | 228105 | 0.69 | 0.804052 |
Target: 5'- uCGUcCAGGcUGUUGCgCGCGuAGCAGccGUCg -3' miRNA: 3'- cGCA-GUCC-ACAACG-GCGC-UCGUC--CAG- -5' |
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13944 | 3' | -57.1 | NC_003521.1 | + | 179833 | 0.69 | 0.795397 |
Target: 5'- aGCGUCGcGGUGUgggGCCaGUGucGCAGGg- -3' miRNA: 3'- -CGCAGU-CCACAa--CGG-CGCu-CGUCCag -5' |
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13944 | 3' | -57.1 | NC_003521.1 | + | 43477 | 0.69 | 0.795397 |
Target: 5'- gGCGUCuGGUGcagcagGCCGaUGAGCAcguugcacaGGUCg -3' miRNA: 3'- -CGCAGuCCACaa----CGGC-GCUCGU---------CCAG- -5' |
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13944 | 3' | -57.1 | NC_003521.1 | + | 12846 | 0.7 | 0.786605 |
Target: 5'- -gGUCGuGGUGggUGCCGcCGuGguGGUCg -3' miRNA: 3'- cgCAGU-CCACa-ACGGC-GCuCguCCAG- -5' |
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13944 | 3' | -57.1 | NC_003521.1 | + | 216809 | 0.7 | 0.776784 |
Target: 5'- cGCGUCAGGUuacgccgGaUGgCGCGcAGgAGGUCg -3' miRNA: 3'- -CGCAGUCCA-------CaACgGCGC-UCgUCCAG- -5' |
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13944 | 3' | -57.1 | NC_003521.1 | + | 166404 | 0.7 | 0.76864 |
Target: 5'- uGCGUCAaGUcGUaGCCGCGGcaCAGGUCg -3' miRNA: 3'- -CGCAGUcCA-CAaCGGCGCUc-GUCCAG- -5' |
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13944 | 3' | -57.1 | NC_003521.1 | + | 124665 | 0.7 | 0.759483 |
Target: 5'- aGCGUgaAGGUGgcGUCGCG-GUAGGUg -3' miRNA: 3'- -CGCAg-UCCACaaCGGCGCuCGUCCAg -5' |
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13944 | 3' | -57.1 | NC_003521.1 | + | 115714 | 0.7 | 0.759483 |
Target: 5'- aGCGUgccCAGGgagaagaggaUGUUGCCguuGCGGGCcAGGUCc -3' miRNA: 3'- -CGCA---GUCC----------ACAACGG---CGCUCG-UCCAG- -5' |
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13944 | 3' | -57.1 | NC_003521.1 | + | 34339 | 0.7 | 0.750221 |
Target: 5'- aGCGgcgCAGGgcgGagGCCGUGAGgccCAGGUCc -3' miRNA: 3'- -CGCa--GUCCa--CaaCGGCGCUC---GUCCAG- -5' |
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13944 | 3' | -57.1 | NC_003521.1 | + | 206625 | 0.71 | 0.712288 |
Target: 5'- -gGUCGGGUGgacgUGUCGCGAcauggacguGCAGGg- -3' miRNA: 3'- cgCAGUCCACa---ACGGCGCU---------CGUCCag -5' |
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13944 | 3' | -57.1 | NC_003521.1 | + | 201749 | 0.72 | 0.673335 |
Target: 5'- aGgGUCAGcGUGUUG-CGCu-GCAGGUCg -3' miRNA: 3'- -CgCAGUC-CACAACgGCGcuCGUCCAG- -5' |
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13944 | 3' | -57.1 | NC_003521.1 | + | 239566 | 0.72 | 0.673335 |
Target: 5'- aGgGUCAGcGUGUUG-CGCu-GCAGGUCg -3' miRNA: 3'- -CgCAGUC-CACAACgGCGcuCGUCCAG- -5' |
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13944 | 3' | -57.1 | NC_003521.1 | + | 81981 | 0.72 | 0.643762 |
Target: 5'- cGCGguagagcCAGGUGcUGCCGCGGGUGuGGUa -3' miRNA: 3'- -CGCa------GUCCACaACGGCGCUCGU-CCAg -5' |
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13944 | 3' | -57.1 | NC_003521.1 | + | 125000 | 0.73 | 0.604244 |
Target: 5'- aGCGUCAGG-GUcaUGuuGCGcAGCAGGc- -3' miRNA: 3'- -CGCAGUCCaCA--ACggCGC-UCGUCCag -5' |
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13944 | 3' | -57.1 | NC_003521.1 | + | 187928 | 0.74 | 0.526513 |
Target: 5'- aCGUCGGGgacgGCgGCGAGgAGGUCg -3' miRNA: 3'- cGCAGUCCacaaCGgCGCUCgUCCAG- -5' |
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13944 | 3' | -57.1 | NC_003521.1 | + | 75612 | 0.75 | 0.507621 |
Target: 5'- aGCGUCAGGUGguagucGUCGCGGGCcgccGUCa -3' miRNA: 3'- -CGCAGUCCACaa----CGGCGCUCGuc--CAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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