Results 41 - 60 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13944 | 3' | -57.1 | NC_003521.1 | + | 78736 | 0.66 | 0.94307 |
Target: 5'- aGCGgcCAGGaGUUGUCGuCGGGCAcggccacgaGGUCc -3' miRNA: 3'- -CGCa-GUCCaCAACGGC-GCUCGU---------CCAG- -5' |
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13944 | 3' | -57.1 | NC_003521.1 | + | 75612 | 0.75 | 0.507621 |
Target: 5'- aGCGUCAGGUGguagucGUCGCGGGCcgccGUCa -3' miRNA: 3'- -CGCAGUCCACaa----CGGCGCUCGuc--CAG- -5' |
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13944 | 3' | -57.1 | NC_003521.1 | + | 75138 | 0.68 | 0.844998 |
Target: 5'- -gGUCGGGg--UGCuCGCGGaagaugucguGCAGGUCg -3' miRNA: 3'- cgCAGUCCacaACG-GCGCU----------CGUCCAG- -5' |
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13944 | 3' | -57.1 | NC_003521.1 | + | 73674 | 0.67 | 0.881453 |
Target: 5'- -gGUCGGGgaaGUgGCgGCGcAGCAGGUg -3' miRNA: 3'- cgCAGUCCa--CAaCGgCGC-UCGUCCAg -5' |
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13944 | 3' | -57.1 | NC_003521.1 | + | 72362 | 0.68 | 0.844998 |
Target: 5'- gGCGUCGGGUaaauaaaacGCCGaCGcgguuGCGGGUCg -3' miRNA: 3'- -CGCAGUCCAcaa------CGGC-GCu----CGUCCAG- -5' |
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13944 | 3' | -57.1 | NC_003521.1 | + | 70280 | 0.68 | 0.874556 |
Target: 5'- gGCG-CAGGUcGgcGCCgaagagaaaGCGGuGCAGGUCg -3' miRNA: 3'- -CGCaGUCCA-CaaCGG---------CGCU-CGUCCAG- -5' |
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13944 | 3' | -57.1 | NC_003521.1 | + | 67565 | 0.66 | 0.923756 |
Target: 5'- uGUGUCAGGcGgcggGCCccGCGGGcCAGaGUCg -3' miRNA: 3'- -CGCAGUCCaCaa--CGG--CGCUC-GUC-CAG- -5' |
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13944 | 3' | -57.1 | NC_003521.1 | + | 62301 | 0.69 | 0.811717 |
Target: 5'- gGCGUCcgcgggacgggcgAGGca-UGCCcgGCGGGCGGGUCg -3' miRNA: 3'- -CGCAG-------------UCCacaACGG--CGCUCGUCCAG- -5' |
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13944 | 3' | -57.1 | NC_003521.1 | + | 61621 | 0.66 | 0.928919 |
Target: 5'- uUG-CAGGaagcggGCCGUGGGCAGGUg -3' miRNA: 3'- cGCaGUCCacaa--CGGCGCUCGUCCAg -5' |
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13944 | 3' | -57.1 | NC_003521.1 | + | 60869 | 0.66 | 0.928919 |
Target: 5'- gGCGUU-GGUGgUGCCGCGcguGUGGGcCu -3' miRNA: 3'- -CGCAGuCCACaACGGCGCu--CGUCCaG- -5' |
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13944 | 3' | -57.1 | NC_003521.1 | + | 60335 | 0.67 | 0.888143 |
Target: 5'- gGCGUCAGGUgaugGUUGCUGacuaccgaGGGCuuGGUa -3' miRNA: 3'- -CGCAGUCCA----CAACGGCg-------CUCGu-CCAg -5' |
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13944 | 3' | -57.1 | NC_003521.1 | + | 57139 | 0.66 | 0.938574 |
Target: 5'- aGCGaUAGGUcucGUcgGCCacGCGcGGCAGGUCg -3' miRNA: 3'- -CGCaGUCCA---CAa-CGG--CGC-UCGUCCAG- -5' |
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13944 | 3' | -57.1 | NC_003521.1 | + | 55370 | 0.66 | 0.938574 |
Target: 5'- cGCGUCucgccGGGUGcggaggUGaUCGcCGAGCGGGUg -3' miRNA: 3'- -CGCAG-----UCCACa-----AC-GGC-GCUCGUCCAg -5' |
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13944 | 3' | -57.1 | NC_003521.1 | + | 43477 | 0.69 | 0.795397 |
Target: 5'- gGCGUCuGGUGcagcagGCCGaUGAGCAcguugcacaGGUCg -3' miRNA: 3'- -CGCAGuCCACaa----CGGC-GCUCGU---------CCAG- -5' |
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13944 | 3' | -57.1 | NC_003521.1 | + | 34427 | 0.69 | 0.834752 |
Target: 5'- gGCGUCGcGGUGcgacuccacguaggcGCUGCGGGCcuggGGGUCg -3' miRNA: 3'- -CGCAGU-CCACaa-------------CGGCGCUCG----UCCAG- -5' |
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13944 | 3' | -57.1 | NC_003521.1 | + | 34339 | 0.7 | 0.750221 |
Target: 5'- aGCGgcgCAGGgcgGagGCCGUGAGgccCAGGUCc -3' miRNA: 3'- -CGCa--GUCCa--CaaCGGCGCUC---GUCCAG- -5' |
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13944 | 3' | -57.1 | NC_003521.1 | + | 32253 | 0.66 | 0.938113 |
Target: 5'- aGCGUCAGGccccggaUGUcauacuUGCCGUGAGCc-GUg -3' miRNA: 3'- -CGCAGUCC-------ACA------ACGGCGCUCGucCAg -5' |
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13944 | 3' | -57.1 | NC_003521.1 | + | 18543 | 0.66 | 0.928919 |
Target: 5'- uGCGgugCGGcccucccGUCGCGGGCAGGUCc -3' miRNA: 3'- -CGCa--GUCcacaa--CGGCGCUCGUCCAG- -5' |
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13944 | 3' | -57.1 | NC_003521.1 | + | 12846 | 0.7 | 0.786605 |
Target: 5'- -gGUCGuGGUGggUGCCGcCGuGguGGUCg -3' miRNA: 3'- cgCAGU-CCACa-ACGGC-GCuCguCCAG- -5' |
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13944 | 3' | -57.1 | NC_003521.1 | + | 12707 | 1.12 | 0.002311 |
Target: 5'- aGCGUCAGGUGUUGCCGCGAGCAGGUCa -3' miRNA: 3'- -CGCAGUCCACAACGGCGCUCGUCCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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