miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13944 5' -52.8 NC_003521.1 + 138148 0.66 0.990655
Target:  5'- uGGGUgCUG-CCCGGCGGCUUCGc--- -3'
miRNA:   3'- -UCUAaGACgGGGCUGUCGGAGUauac -5'
13944 5' -52.8 NC_003521.1 + 240100 0.67 0.984699
Target:  5'- ---gUCUGCuCCCGugGGCCggcCGUAc- -3'
miRNA:   3'- ucuaAGACG-GGGCugUCGGa--GUAUac -5'
13944 5' -52.8 NC_003521.1 + 30128 0.67 0.984699
Target:  5'- uGAUUCUGCCUg---AGCCUCAUGa- -3'
miRNA:   3'- uCUAAGACGGGgcugUCGGAGUAUac -5'
13944 5' -52.8 NC_003521.1 + 17985 0.67 0.980807
Target:  5'- cGGGUUCUcCCCCGGCAcccacgugcguuGCCagUAUGUGg -3'
miRNA:   3'- -UCUAAGAcGGGGCUGU------------CGGa-GUAUAC- -5'
13944 5' -52.8 NC_003521.1 + 146148 0.67 0.980807
Target:  5'- ------cGCCgCCGGCGGCCUCGUc-- -3'
miRNA:   3'- ucuaagaCGG-GGCUGUCGGAGUAuac -5'
13944 5' -52.8 NC_003521.1 + 193175 0.67 0.976217
Target:  5'- uGAUg--GCCCUGACGGCCUUc---- -3'
miRNA:   3'- uCUAagaCGGGGCUGUCGGAGuauac -5'
13944 5' -52.8 NC_003521.1 + 216725 0.68 0.973643
Target:  5'- cGGUaUCUGCCCUGgGCGGCUUCGc--- -3'
miRNA:   3'- uCUA-AGACGGGGC-UGUCGGAGUauac -5'
13944 5' -52.8 NC_003521.1 + 201618 0.68 0.961316
Target:  5'- cGGUUCgUGUCCCGucGCcGCCUCGUGg- -3'
miRNA:   3'- uCUAAG-ACGGGGC--UGuCGGAGUAUac -5'
13944 5' -52.8 NC_003521.1 + 239697 0.68 0.961316
Target:  5'- cGGUUCgUGUCCCGucGCcGCCUCGUGg- -3'
miRNA:   3'- uCUAAG-ACGGGGC--UGuCGGAGUAUac -5'
13944 5' -52.8 NC_003521.1 + 3663 0.71 0.895368
Target:  5'- ---gUCUGCCUCGGCGGCCgggacccUCGUcgGa -3'
miRNA:   3'- ucuaAGACGGGGCUGUCGG-------AGUAuaC- -5'
13944 5' -52.8 NC_003521.1 + 233426 0.72 0.867973
Target:  5'- cGGUg--GCUCCGACGGCCUCGa--- -3'
miRNA:   3'- uCUAagaCGGGGCUGUCGGAGUauac -5'
13944 5' -52.8 NC_003521.1 + 51471 0.77 0.61474
Target:  5'- cGGUcaUCUGCCCCGGCAGCC-CGa--- -3'
miRNA:   3'- uCUA--AGACGGGGCUGUCGGaGUauac -5'
13944 5' -52.8 NC_003521.1 + 12669 1.09 0.008079
Target:  5'- cAGAUUCUGCCCCGACAGCCUCAUAUGa -3'
miRNA:   3'- -UCUAAGACGGGGCUGUCGGAGUAUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.